Locus 6471

Sequence ID 2L_DroMel_CAF1
Location 18,188,318 – 18,188,422
Length 104
Max. P 0.534548
window10331

overview

Window 1

Location 18,188,318 – 18,188,422
Length 104
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -27.73
Consensus MFE -16.02
Energy contribution -16.70
Covariance contribution 0.68
Combinations/Pair 1.45
Mean z-score -1.59
Structure conservation index 0.58
SVM decision value 0.00
SVM RNA-class probability 0.534548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18188318 104 - 22407834
GUGAAAAAAAGGGG-GGGCGGGGUAGUCAAC--GGUAUUCCGCUUGCCAAAUAGCAAGCA-ACCAAGCACUUAGAAAAACUCACUUAGUGAGAUUGGGAAUCUUAAGU
((.........((.-((((((((((.(....--).)))))))))).)).........)).-.((((.((((.((.........)).))))...))))........... ( -26.47)
>DroSec_CAF1 31151 101 - 1
GGGAAA---AGAGG-GGGCGUGGCAGUCCCC--GGGAUUCCGCUUGCCAAAUAGCAAGCA-ACCAAGCACUUAGAAAAACUCACUUAGUGAGAUUGGGAAUCUUAAGU
......---...((-((((......))))))--((((((((((((((......)))))).-..(((.((((.((.........)).))))...))))))))))).... ( -37.20)
>DroSim_CAF1 31783 101 - 1
GGGAAA---AGAGG-GGGCGUGGCAGUCCCC--GGGAUUCCGCUUGCCAAAUAGCAAGCA-ACCAAGCACUUAGAAAAACUCACUUAGUGGGAUUGGGAAUCUUAAGU
......---...((-((((......))))))--((((((((((((((......)))))).-..................(((((...)))))....)))))))).... ( -36.20)
>DroEre_CAF1 31366 102 - 1
GGAAGA---AGAGGAAGGCGUGGCAGUCCCC--GGGAUUCCACUUGCCAAAUAGCAAGCA-AGCAAGCACUUAGAAAAACUCACUUAGUGAGAUUGGGAAUCUUAAGU
......---.(.(((..((...))..))).)--((((((((.(((((......)))))..-..................(((((...)))))....)))))))).... ( -25.20)
>DroYak_CAF1 31104 102 - 1
CGGAAA---AGAGGGGGGCGUGGCAGUUCAU--GGGAUUCAGCUUGCCAAAUAGCGAGCA-ACCAAGCACUUAGAAAAACUCACUUAGUGAGAUUGGGAAUCUAAAGU
......---......((((......))))..--.((((((.((((((......)))))).-.((((.((((.((.........)).))))...))))))))))..... ( -27.00)
>DroAna_CAF1 27635 92 - 1
GGGCUA---AAAGGAGGG---GGCAGCCACAAGGGGUCUUUACUUUCAAAAUAAAAAACAGACUGUGCACUUGGAGAAAA--AUUUGG-------GGGAACUUCAAG-
......---...((((((---(((..((....)).)))))..((..((((........(((.........))).......--.)))).-------.))..))))...- ( -14.29)
>consensus
GGGAAA___AGAGG_GGGCGUGGCAGUCCCC__GGGAUUCCGCUUGCCAAAUAGCAAGCA_ACCAAGCACUUAGAAAAACUCACUUAGUGAGAUUGGGAAUCUUAAGU
................(((......))).....((((((((((((((......))))))....................(((((...)))))....)))))))).... (-16.02 = -16.70 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:01 2006