| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,174,747 – 18,174,842 |
| Length | 95 |
| Max. P | 0.725244 |
| Location | 18,174,747 – 18,174,842 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.57 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18174747 95 + 22407834 UUGAA------------UGUUUACAAAUAAAG-----CAACUCUUGUAGGUGAGCGCAUUGGAAACAAUUAUGCGAAUAAUAACGCACUUGUGUGCGAUUAUUUUGCCCCUC .....------------.((((((..((((..-----......))))..))))))((((((....))...))))(((((((..(((((....))))))))))))........ ( -22.50) >DroSec_CAF1 17473 95 + 1 UUGAA------------UGUAUACAAAUAAAG-----CAACACUUGUGGGUGAACGCAUUGGAAACAAUUAUGCGAAUAAUAACGCACUUGUGUGCGAUUAUUUUGCCCCUC .....------------...............-----..........(((..(.(((((((....))...)))))...((((((((((....))))).))))))..)))... ( -24.40) >DroSim_CAF1 17509 95 + 1 UUGAU------------UGUAUACAAAUAAAG-----CAACACUUGUGGGUGAACGCAUUGGAAACAAUUAUGCGAAUAAUAACGCACUUGUGUGCGAUUAUUUUGCCCCUC .((((------------(((((((((.....(-----(..((((....))))..(((((((....))...))))).........))..)))))))))))))........... ( -25.20) >DroEre_CAF1 17427 95 + 1 UUAAA------------UGUACACAAAGAGAG-----CAACACUUGUGGGUGAGGGCAUUGGAAACAAUUAUGGGAAUAAUAAAGCACUCGUGUGCGAUUAUUUUCACCUUC .....------------....(((((......-----......)))))...(((((.((((....))))..((..((((((...((((....)))).))))))..))))))) ( -25.50) >DroYak_CAF1 17468 95 + 1 UUAAA------------UGUAUACAAAUAGAG-----CAACACUUGUGGGUGAGCGCAUUGGAAACAAUUAUGCGAAUAUUAAAGCACUUGUGUGCGAUUAUUUUCACCUUC .....------------...............-----..........((((((((((((((....))...))))).........((((....)))).......))))))).. ( -22.10) >DroPer_CAF1 18726 108 + 1 UUGAAAGCAUUACGAUAUGUAUCCAUCGAAUGCUGCUCAAUGCUU--AAAUGGCGGCAAUGAAAACAAUUUUGCGUACAAUCAACGAGUUGUGUGCGAUUAUU--GCCCCUC ((((.((((((.((((........))))))))))..)))).....--....((.((((((((........(((((((((((......))))))))))))))))--))))).. ( -32.20) >consensus UUGAA____________UGUAUACAAAUAAAG_____CAACACUUGUGGGUGAGCGCAUUGGAAACAAUUAUGCGAAUAAUAAAGCACUUGUGUGCGAUUAUUUUGCCCCUC .................(((((((((..............((((....))))..(((((((....))...))))).............)))))))))............... (-12.87 = -13.57 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:57 2006