Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,169,610 – 18,169,714 |
Length | 104 |
Max. P | 0.678877 |
Location | 18,169,610 – 18,169,714 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 83.44 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -14.54 |
Energy contribution | -14.66 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.22 |
Mean z-score | -2.17 |
Structure conservation index | 0.59 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18169610 104 + 22407834 AA-------CUAAGUGUUUAAGCA-GUCAUUAAAAGAUUGUUGAAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCACUUGUAGAAUGAACGA ..-------.(((((((((.....-.((((((((((((((((..(((.((((.....))))..)))..))))))))..)))))))).....)))))))))............ ( -22.50) >DroSec_CAF1 12142 104 + 1 AA-------CUAAGUGUUUAAGCU-UUCAUUAAAAGGUUGGAGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCGCUUGUAGAAUGAACGA ..-------.(((((((((.....-(((((((((((((((((((.........)))))).)))..((((....))))))))))))))....)))))))))............ ( -28.30) >DroSim_CAF1 12164 104 + 1 AA-------CUAAGUGUUUAAGCU-UUCAUUAAAAGGUUGGAGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCGCUUGUAGAAUGAACGA ..-------.(((((((((.....-(((((((((((((((((((.........)))))).)))..((((....))))))))))))))....)))))))))............ ( -28.30) >DroEre_CAF1 12362 104 + 1 AA--------CAAAAGCUUAAGCUUUUCAUUAAAAUAUUGGUGCGAUUUAUGAGUUCCGUGCCAUUAGAGCAAUAUGUUUUAAUGAAUUUAAAGCACUUGCAGAAUAAACGA ..--------.....((....(((((((((((((((((...(((.....(((.((.....)))))....)))..))))))))))))....)))))....))........... ( -22.60) >DroYak_CAF1 12396 111 + 1 AAUGUGUAAGCACUUGCUUAAGCUUUUCAUUAAAAAAUUUAUACGAUCUAUGAGUUUCUCGAUAUUAGAGCAAUCUGUUUUAAAGAAUUUAAAGCAC-UGCAGAAUAAGCGA ...(((....)))(((((((.(((((..((..(.(((((((((.....))))))))).)..))...)))))....((((((((.....)))))))).-.......))))))) ( -21.40) >consensus AA_______CUAAGUGUUUAAGCU_UUCAUUAAAAGAUUGGUGCAAUUUAUGAGUUCCGUGCCAUUAGAGCAAUCUGUUUUAAUGAAUUUAAAGCACUUGUAGAAUGAACGA ..........(((((((((.......((((....(((((.....))))))))).........(((((((((.....)))))))))......)))))))))............ (-14.54 = -14.66 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:56 2006