| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,166,404 – 18,166,506 |
| Length | 102 |
| Max. P | 0.518180 |
| Location | 18,166,404 – 18,166,506 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 74.56 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -11.19 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18166404 102 - 22407834 --GCAGCUAAAAGUUUUUAAUGAAUUUUUUAGCAAGCUAAUCGAAGUCAAUGUUAGUUGAAAAAUGCAUUAACUAACGUGGCACGUAUGCUCAACG----------------CGUCGUAU --((.((((((((.(((....))).))))))))..))........((((.((((((((((........))))))))))))))(((.((((.....)----------------)))))).. ( -27.30) >DroVir_CAF1 13856 95 - 1 CGCUCGCUAAAAGUUUUUAAUGAAUUUUUUAGGAAGCUAAUCGAAGUCACUUUUAGUUGAAAAAUGCAUUAACUAACG---------UGCACCACG----------------UGCCGUAA .(((..(((((((.(((....))).)))))))..)))................(((((((........)))))))(((---------.((((...)----------------)))))).. ( -18.70) >DroPse_CAF1 9787 118 - 1 --GCAGCUAAAAGUUUUUAAUGAAUUUUUCAGCAAGCUAAUCGAAGUCAAUGUUAGUUGAAAAAUGCAUUAAAUAACGUGGCACGUGUGCUCAGCGCUCAGCGCUCAACGGGCGUCGUAU --...((((...((((((((((.((((((((((.(((..............))).)))))))))).))))))).))).))))(((...(((((((((...)))))....))))..))).. ( -34.94) >DroGri_CAF1 11532 102 - 1 CUAACGCUAAAAGUUUUUAAUGAAUUUUUUAGCAAACUAAUCGAAGUCACUUCUAGUUGAAAGAUAUAUUAACUAUCGCUCUU--CGUGUACAAGG----------------UGGCGAAU .....((((((((.(((....))).))))))))............(((((((.(((((((........))))))).(((....--.)))....)))----------------)))).... ( -20.10) >DroMoj_CAF1 13813 103 - 1 CGCUCGCUAAAAGUUUUUAAUGAAUUUUUUAGCAAGCUAAUCGAAGUCAGGUUUAGUUGAGAAAUGCAUUAACUAAAGCUCAA-GUCUGCAGCACA----------------CGGCGUAU ((((.((((((((.(((....))).))))))))..(((....((..(.((.(((((((((........))))))))).)).).-.))...)))...----------------.))))... ( -25.20) >DroPer_CAF1 9776 118 - 1 --GCAGCUAAAAGUUUUUAAUGAAUUUUUCAGCAAGCUAAUCGAAGUCAAUGUUAGUUGAAAAAUGCAUUAAAUAACGUGGCACGUGUGCUCAGCGCUCAGCGCUCAACGGGCGUCGUAU --...((((...((((((((((.((((((((((.(((..............))).)))))))))).))))))).))).))))(((...(((((((((...)))))....))))..))).. ( -34.94) >consensus __GCAGCUAAAAGUUUUUAAUGAAUUUUUUAGCAAGCUAAUCGAAGUCAAUGUUAGUUGAAAAAUGCAUUAACUAACGUGGCA_GUGUGCACAACG________________CGUCGUAU .....(((((((((((.....)))))))).)))..((............(((((((((((........))))))))))).........)).............................. (-11.19 = -12.08 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:53 2006