Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,166,261 – 18,166,355 |
Length | 94 |
Max. P | 0.538472 |
Location | 18,166,261 – 18,166,355 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -16.78 |
Consensus MFE | -11.46 |
Energy contribution | -11.68 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.13 |
Mean z-score | -1.09 |
Structure conservation index | 0.68 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18166261 94 + 22407834 UCUGACCUUCUGCGAACGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAAAAAUGAAAAAAAAAAAAUAACUAAAAACACU (((((....((((..((..((((........))))...)).)))).)))))..-----......................................... ( -13.30) >DroSec_CAF1 8809 89 + 1 UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAGAAAUAAAAAAAGAAUG-----GGAAAACACU .......(((((((.(.((((.((((...........)))).)))).).((..-----..)).)))))))..............-----.......... ( -18.90) >DroSim_CAF1 8830 89 + 1 UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU-----CCUCGCGCAGAAAUAAAAAAAGAAUG-----GAAAAACACU .......(((((((.(.((((.((((...........)))).)))).).((..-----..)).)))))))..............-----.......... ( -18.90) >DroEre_CAF1 8952 88 + 1 CCUGACCUUCUGCCAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGUUCAGACUUUUCGCUUCGCGCAGAAAUAAAAAACCA----------A-AACACU .((((....((((((.(..((((........))))...))))))).))))...((((((.....)).))))..........----------.-...... ( -18.50) >DroYak_CAF1 9069 84 + 1 UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGUUCAGACU-----CUUCGCACAGAAGUAAAAAACCA----------AAAACAGU (((((....((((..((..((((........))))...)).)))).)))))..-----((((.....))))..........----------........ ( -17.00) >DroAna_CAF1 7627 71 + 1 UCUGACCUUCUGCGAG--CUGACAUUUAACAGUCAAGAGUGGCAGCGCAGACA-----UUUCCCAAA-----AAAAAA----------------AGCUU ........(((((..(--(((.(((((.........))))).)))))))))..-----.........-----......----------------..... ( -14.10) >consensus UCUGACCUUCUGCGAGCGCUGGCAUUAAAAAGUCAAAAGUGGCAGCUCAGACU_____CCUCGCGCAGAAAUAAAAAAACA__________AAAACACU (((((....((((..((..((((........))))...)).)))).)))))................................................ (-11.46 = -11.68 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:52 2006