Locus 6462

Sequence ID 2L_DroMel_CAF1
Location 18,152,224 – 18,152,320
Length 96
Max. P 0.777684
window10319

overview

Window 9

Location 18,152,224 – 18,152,320
Length 96
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 65.21
Mean single sequence MFE -28.16
Consensus MFE -10.39
Energy contribution -13.45
Covariance contribution 3.06
Combinations/Pair 1.26
Mean z-score -1.84
Structure conservation index 0.37
SVM decision value 0.55
SVM RNA-class probability 0.777684
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18152224 96 - 22407834
ACAAGGCCGUUCGUGUUGUUCAAGCAACCUACGAAUAGUUGAUAGCGAUCCUAAGAGAGGGCCGCCUCUCUUAGUGAGU--------------------UGCAGUCUAUACAUAU-A
....(((..((((((((((....)))))..)))))..)))(((.((((((((((((((((....)))))))))).)).)--------------------))).))).........-. ( -35.00)
>DroVir_CAF1 45249 92 - 1
AGCAGCUCUUCGGCAUUGUCCAAACAGCCCACGAACAGCUGAUAACGAUCCUAAGUGU-----------UAUAAAUAAUAUGUU--AA-----------ACUAGUCCAACU-CUUAA
..(((((.(((((..((((....))))..).)))).)))))((((((........)))-----------)))............--..-----------............-..... ( -14.60)
>DroSec_CAF1 2662 113 - 1
ACAAGGCCGUUUGUGUUGUUCAAGCAACCUACGAAUAGUUGAUAGCGAUCCUAAGAGAGGGCCGCCUCUCUUAGUGAGU-UUUU--UACUCGGGUAAAAUGCAGUCUAAACAUGU-A
(((.(((..((((((((((....)))))..)))))..)))(((.(((.((((((((((((....)))))))))).))..-.(((--(((....))))))))).)))......)))-. ( -34.10)
>DroSim_CAF1 5001 113 - 1
ACAAGGCCGUUUGUGUUGUUCAAGCAGCCUACGAAUAGUUGAUAGCGAUCCUAAGAGAGGGCCGCCUCUCUUAGUGAGU-UUUU--UACUCGGGUAAAAUGCAGUCUAAACAUGU-A
(((((((.(((((.......))))).)))).......((((((.(((.((((((((((((....)))))))))).))..-.(((--(((....))))))))).)))..))).)))-. ( -36.00)
>DroYak_CAF1 3031 113 - 1
ACAAGGCCGUUUGUGUUGGUCAAGCAACCUACAAAUAGUUGAUAGCGAUCCUAAGAGAGGGUCGCCUCUCUUAGUAAAC-UUUU--UGAACGGGAAAAAAACAACCUUUACAUGU-A
(((.(((((.......)))))......(((.((((.(((((((....)))((((((((((....))))))))))..)))-).))--))...)))..................)))-. ( -28.10)
>DroAna_CAF1 23570 109 - 1
AAAAGCCCGUUUGUGUUGUUCAGACCUCCCACAAAAAGUUGAUAGCGAUCCUAACAAAUGAGCA---AACGAAACGGGU-UGCAAAAAUUCAAGUAAA---GAGUGCUUUCAUAU-A
...(((((((((...(((((((................(((.(((.....))).))).))))))---)...))))))))-)..........(((((..---...)))))......-. ( -21.13)
>consensus
ACAAGGCCGUUUGUGUUGUUCAAGCAACCUACGAAUAGUUGAUAGCGAUCCUAAGAGAGGGCCGCCUCUCUUAGUGAGU_UUUU__UA_UCGGGUAAA_UGCAGUCUAAACAUGU_A
....(((..((((((((((....)))))..)))))..)))..........((((((((((....))))))))))........................................... (-10.39 = -13.45 +   3.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:48 2006