Locus 6460

Sequence ID 2L_DroMel_CAF1
Location 18,147,174 – 18,147,290
Length 116
Max. P 0.825680
window10316

overview

Window 6

Location 18,147,174 – 18,147,290
Length 116
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 89.66
Mean single sequence MFE -22.79
Consensus MFE -17.11
Energy contribution -17.30
Covariance contribution 0.19
Combinations/Pair 1.20
Mean z-score -2.14
Structure conservation index 0.75
SVM decision value 0.70
SVM RNA-class probability 0.825680
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18147174 116 - 22407834
UACAGUGAAGCCUCGACAGUGGCGUGCGCACCCACAAGAAAAUACAACCACUUACUCGCAUUCCACUCCGCGUUUUCCCACGCCAAACAUAACCAUAUCGAAUAUCACUGAUAACA
..((((((....((((.(((((.(((((............................))))).)))))..((((......))))..............))))...))))))...... ( -25.79)
>DroSec_CAF1 11164 116 - 1
UACAGUGGAGCCUCGCCAGAGGCGCGCGCACCCACGAGAAUACACAACCACUUACUCACAUUCCACUCCGCGUUUUCCCACGCCAAACAUAACCAUAUCGAAUAUCACUGAUAACA
...(((((((((((....)))))............(((................)))....))))))..((((......))))............(((((........)))))... ( -23.69)
>DroSim_CAF1 11145 116 - 1
UACAGUGGAGCCUCGCCAGAGGCGCGCGCACCCACGAGAAUACACAACCACUUACUCACAUUCCACUCCGCGUUUUCCCACGCCAAACAUAACCAUAUCGAAUAUCACUGAUAACA
...(((((((((((....)))))............(((................)))....))))))..((((......))))............(((((........)))))... ( -23.69)
>DroYak_CAF1 11439 112 - 1
UACAGUGAAGCCUCGCU-GGGGCGCACGCACCCGCA---AAAUGCAACCACUUACUCACAUUCCCCUCUGUGUUUUCCCACGACAAACAUAACCAUAUCGAAUAUCCCUGAUUACA
..((((((....)))))-)(((.(....).)))((.---....)).......................(((((((((....)).)))))))......................... ( -18.00)
>consensus
UACAGUGAAGCCUCGCCAGAGGCGCGCGCACCCACAAGAAAACACAACCACUUACUCACAUUCCACUCCGCGUUUUCCCACGCCAAACAUAACCAUAUCGAAUAUCACUGAUAACA
..((((((.(((((....)))))..............................................((((......)))).....................))))))...... (-17.11 = -17.30 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:45 2006