Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,947,088 – 1,947,187 |
Length | 99 |
Max. P | 0.505575 |
Location | 1,947,088 – 1,947,187 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 94.93 |
Mean single sequence MFE | -30.24 |
Consensus MFE | -27.75 |
Energy contribution | -27.35 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.08 |
Structure conservation index | 0.92 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1947088 99 + 22407834 CCGCGGUGCGGUUUUGUGCUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGA-ACAG--------GCGGACAAUGGCUGGAGCAAUGGAAUCGCAA ......((((((((..(((((..((((.(((...(......)..))).))))..(((((.((..-....--------))......))))).)))).)..)))))))). ( -29.90) >DroSec_CAF1 111752 99 + 1 CCGCGGUGCGGUUUUGUGCUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGA-ACAG--------GCGGACAAUGGCUGGAGCAAUAGAAUCGCAA ......(((((((((((((((..((((.(((...(......)..))).))))..(((((.((..-....--------))......))))).)))).))))))))))). ( -30.40) >DroSim_CAF1 95718 100 + 1 CCGCGGUGCGGUUUUGUGCUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGAAACAG--------GCGGACAAUGGCUGGAGCAAUAGAAUCGCAA ......(((((((((((((((..((((.(((...(......)..))).))))..(((((.((.......--------))......))))).)))).))))))))))). ( -29.90) >DroEre_CAF1 114237 107 + 1 CCGCGGUGCGGUUUUGUGCUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGA-GCAGGCGAACAGGCGGACAAUGGCUGGAGCAAUGGAAUCGCAA ......((((((((..(((((..((((.(((...(......)..))).))))..(((((.....-((..(....)..))......))))).)))).)..)))))))). ( -32.60) >DroYak_CAF1 122711 99 + 1 CCGCGGUGCGGUUUUGUGUUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGA-GCAG--------GCGGACAAUGGCUGGAGCAAUGGAAUCGCAA ..(((((.(((((((((((((..(..((......))..)..)).....))))))))))..((..-.(((--------.((.....)).)))..))....).))))).. ( -28.40) >consensus CCGCGGUGCGGUUUUGUGCUCAGGUGUGAAUAAGCGUGCAAGAAGUUGACAUAAAGCCAGGCGA_ACAG________GCGGACAAUGGCUGGAGCAAUGGAAUCGCAA ......(((((((((((((((..((((.(((...(......)..))).))))..(((((..........................))))).)))).))))))))))). (-27.75 = -27.35 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:47 2006