Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,146,519 – 18,146,609 |
Length | 90 |
Max. P | 0.527713 |
Location | 18,146,519 – 18,146,609 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 76.77 |
Mean single sequence MFE | -26.44 |
Consensus MFE | -12.97 |
Energy contribution | -13.67 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.07 |
Mean z-score | -1.81 |
Structure conservation index | 0.49 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18146519 90 + 22407834 UUGUUGUUGUACGGCUUCGGACGAAUUCAGCCGCUACACCUUUACAUUCAUACACCUUUAGCAAGAAGCCA---UGGCCAACAACAGGGCCCA (((((((((..(((((((((..(....)..))((((......................))))..)))))).---.)..)))))))))...... ( -23.75) >DroPse_CAF1 12137 87 + 1 UUGUUGUUGUACGGCUUCAGCCGAAUUGAGCGGCACGGCGGAUAGGC---UACACCUUUAGCAAGAAGCCAGAAAGGCCGAAAGA---GCCAG ............((((((.((((.......))))...((....(((.---....)))...))..)))))).....((((....).---))).. ( -29.90) >DroSim_CAF1 10476 90 + 1 UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACAUUCAUACACCUUUAGCAAGAAGCCA---UGGCCAACAGCGGGGCCCA (((((((((..((((((((((.(....).)))((((......................))))..)))))).---.)..)))))))))...... ( -26.45) >DroEre_CAF1 10520 89 + 1 UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACACUCAUACGCCUUUAGCAAGAAGCCA---UGGCCAACAACAG-GCCCA (((((((((..((((((((((.(....).)))((((......................))))..)))))).---.)..)))))))))-..... ( -27.25) >DroAna_CAF1 9993 71 + 1 UUGUUGUUGUACGGCUUCGGCCGAAUUGAGCGGCUACAC----------------CUUUAGCAAGAAGCCA---CGGCCAACAGA---GCUCC ((((((((((.((((....))))........((((.(..----------------.........).)))))---))).)))))).---..... ( -21.40) >DroPer_CAF1 13342 87 + 1 UUGUUGUUGUACGGCUUCAGCCGAAUUGAGCGGCACGGCGGAUAGGC---UACACCUUUAGCAAGAAGCCAGAAAGGCCGAAAGA---GCCAG ............((((((.((((.......))))...((....(((.---....)))...))..)))))).....((((....).---))).. ( -29.90) >consensus UUGUUGUUGUACGGCUUCGGCCGAAUUCAGCCGCUACACCUUUACAC___UACACCUUUAGCAAGAAGCCA___UGGCCAACAGA___GCCCA ............((((((.((........)).((((......................))))..)))))).....(((..........))).. (-12.97 = -13.67 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:44 2006