| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,144,884 – 18,144,982 |
| Length | 98 |
| Max. P | 0.551342 |
| Location | 18,144,884 – 18,144,982 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 83.32 |
| Mean single sequence MFE | -17.97 |
| Consensus MFE | -15.63 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18144884 98 - 22407834 CCCAUGCUUACCUAUGUAUGUACAU----AUUUGCUUUUCCCUGGAAAAGCCAACGAAAUGCUUUUGAUUGUUCUUAGAAUUCCGUUUCGUUUCCACUUCGC ..(((((........))))).....----....(((((((....))))))).(((((((((.((((((......))))))...))))))))).......... ( -21.70) >DroPse_CAF1 10078 90 - 1 UCCGUCUCUCCGU--------ACAU----AUUUGCUUUUCCUGGGAAAAGCGAACGAAAUGCUUUUGAUUGUUCUAAGAAUUUUGUUUCGUUUCAACUUUGC .............--------....----....(((((((....)))))))(((((((((.(((..((....)).))).))))))))).............. ( -17.30) >DroEre_CAF1 8965 87 - 1 C-CUUGCUUACCU--------ACAU----AUUUGCUUUUCCGAGGAAAAGCCAACGAAAUGCU-UUGAUUGUUCUUAGAAUUCCAU-UCGUUUCCACCUUGC .-...........--------....----....(((((((....)))))))....((((((..-.((...((((...))))..)).-.))))))........ ( -13.30) >DroYak_CAF1 9173 93 - 1 C-CGUGCUUACCU--------ACAUAUGUAUUUGCUUUUCCCUGGAAAAGCCAACGAAAUGCUUUUGAUUGUUCUUAGAAUUCCGUUUCGUUUCCACUUUGC .-.(((.......--------............(((((((....))))))).(((((((((.((((((......))))))...)))))))))..)))..... ( -19.60) >DroAna_CAF1 8190 90 - 1 CCAGUGCUUACCU--------ACAU----AUUUGCUUUUCUGCGGAAAGGCGAACGAAAUGCUUUUGAUUGUUCUUAGAAUUUCGUUUCGUUUCAACUUUGC ..(((........--------....----....(((((((....)))))))((((((((((.((((((......))))))...))))))))))..))).... ( -18.60) >DroPer_CAF1 11278 90 - 1 CCCGUCUCCCCGU--------ACAU----AUUUGCUUUUCCUGGGAAAAGCGAACGAAAUGCUUUUGAUUGUUCUAAGAAUUUUGUUUCGUUUCAACUUUGC .............--------....----....(((((((....)))))))(((((((((.(((..((....)).))).))))))))).............. ( -17.30) >consensus CCCGUGCUUACCU________ACAU____AUUUGCUUUUCCCGGGAAAAGCCAACGAAAUGCUUUUGAUUGUUCUUAGAAUUCCGUUUCGUUUCAACUUUGC .................................(((((((....))))))).(((((((((.((((((......))))))...))))))))).......... (-15.63 = -15.80 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:43 2006