Locus 6456

Sequence ID 2L_DroMel_CAF1
Location 18,139,681 – 18,139,780
Length 99
Max. P 0.500000
window10311

overview

Window 1

Location 18,139,681 – 18,139,780
Length 99
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 65.32
Mean single sequence MFE -20.85
Consensus MFE -9.55
Energy contribution -10.33
Covariance contribution 0.78
Combinations/Pair 1.25
Mean z-score -1.39
Structure conservation index 0.46
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18139681 99 - 22407834
UACUGGAUUCAUUAUUACCUCACAACCAUGACAGUUCAU-UAUCGAUCAAUCAGAGGGCCUUAUUGGCCAAUCGGUGAUCCAAUUAUUUCGCCAUUGAGG--------
.................(((((...(..(((..(.((..-....)).)..)))..)((((.....))))....(((((..........)))))..)))))-------- ( -21.20)
>DroSec_CAF1 3887 85 - 1
UACUGGAUUCA--------------CCAUGACGGAUCAU-UAUCGAUCAAUCAGCGGACCUUAUUGGCCAAUCGGUGAUCCAAUUAUUUCGCCAUUGAGG--------
...(((((.((--------------((.(((..((((..-....))))..)))..((.((.....))))....)))))))))..................-------- ( -23.80)
>DroSim_CAF1 3921 78 - 1
UACUGGA---------------------UGACGGAUCAU-UAUCGAUCAAUCAGCGGGCCAUAUUGGCCAAUCGGUGAUCCAAUUAUUUCGCCAUUGAGG--------
..((.((---------------------((.((((((..-....)))).((((.((((((.....))))...)).))))..........)).)))).)).-------- ( -23.20)
>DroEre_CAF1 3790 84 - 1
UA---------------AAUCCCCGUCAUCACGAAUCAC-CACCGAUCAGUCAGAAGGCGUUAUUGGCCAAUCCGCGAUCCAAUUAUUUCGCCAUUGAGU--------
..---------------......((((.((((..(((..-....)))..))..)).))))......((((((..((((..........)))).)))).))-------- ( -12.00)
>DroYak_CAF1 3909 77 - 1
UA---------------CCUACCCCUCAUCGCGGAUCAC-CAUCGAUCAAUCAGAGGGCG-------CCAAUCGGUGAUCCAAUUAUUUCGCCACUGAGG--------
..---------------......(((((..(((((((..-....)))).......(((((-------((....)))).)))........)))...)))))-------- ( -22.00)
>DroPer_CAF1 3518 97 - 1
AAAUGUAA----------AGAACUUUCGUGACUGAUCGCCUAUCGAUCAAUCAGUUGUGC-AAUCAGCUGAUCGGUGAUCUAGUUAUUUCACCAUCGAACAACUCAAU
...(((..----------.((......(((((((((((((.........((((((((...-...)))))))).))))))).)))))).......))..)))....... ( -22.92)
>consensus
UACUGGA____________U__C__UCAUGACGGAUCAC_UAUCGAUCAAUCAGAGGGCCUUAUUGGCCAAUCGGUGAUCCAAUUAUUUCGCCAUUGAGG________
.................................((((.......))))..((((..(((.......)))....(((((..........))))).)))).......... ( -9.55 = -10.33 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:41 2006