Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,138,069 – 18,138,166 |
Length | 97 |
Max. P | 0.810218 |
Location | 18,138,069 – 18,138,166 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 79.93 |
Mean single sequence MFE | -35.58 |
Consensus MFE | -24.37 |
Energy contribution | -25.57 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.31 |
Mean z-score | -1.71 |
Structure conservation index | 0.68 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18138069 97 + 22407834 CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCGUCGUCGUCGGUGGCACCAUCUGC-GCAUUGCCGCUGCUGCUCC ...........(((((..((((((.....))))))..)))))..(((((((((((.((.(((.((((....)))).))-)...)).))))))))))). ( -40.70) >DroVir_CAF1 1920 92 + 1 --CACUUAAAAUUUGCUCAUUUGCAUUGAGCGCGUCCGCAGACAUCGCGACGCCC--UCGGACAGUGGAAAUUGUUGCU--GCUCCUGCUGCUGCUGC --............((......(((..(((.(((((.((.......))))))).)--))((((((..(......)..))--).))))))....))... ( -25.90) >DroSec_CAF1 2273 97 + 1 CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAAGGCGGCGGCGUCGUCGUCGGUGGCACCACCUGC-GCAUUGCCGCUGCUGCUCC ...........(((((..((((((.....))))))..)))))...((((((((((..(.(((.((((....)))).))-))..))))))))))..... ( -42.50) >DroSim_CAF1 2281 97 + 1 CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCGUCGUCGUCGGUGGCACCACCUGC-GCAUUGCCGCUGCUGCUCC ...........(((((..((((((.....))))))..)))))..(((((((((((.((.(((.((((....)))).))-)...)).))))))))))). ( -43.30) >DroEre_CAF1 2226 91 + 1 CACGUUCACAAUCUGCCCGUUCGCAUUCAGCGAGUCCGCAGACAGGGAGGCGU------UGUUGGUGGCACCACCUUC-GCAGUGCCGCUGCUGCUCC ...........(((((...(((((.....)))))...)))))(((((.(((((------(((.((((....))))...-)))))))).)).))).... ( -31.50) >DroYak_CAF1 2287 91 + 1 CACAUUCACAAUCUGGCCAUUUGCAUUCAGCGAGUCCGCAGACAGGGAGGCGG------CGUCGAUGGCACCACCUUC-GCAGUGGCGCUGCUGCUCC ...........((((...((((((.....))))))...))))..(((.(((((------(((((...((.........-))..)))))))))).))). ( -29.60) >consensus CACAUUCACAAUCUGCCCAUUUGCAUUCAGCGAAUCCGCAGACAGGGCGGCGGCG__GUCGUCGGUGGCACCACCUGC_GCAUUGCCGCUGCUGCUCC ...........(((((..((((((.....))))))..)))))..(((((((((((....))))(((((((.............)))))))))))))). (-24.37 = -25.57 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:40 2006