Locus 6454

Sequence ID 2L_DroMel_CAF1
Location 18,133,909 – 18,134,025
Length 116
Max. P 0.962561
window10309

overview

Window 9

Location 18,133,909 – 18,134,025
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 90.60
Mean single sequence MFE -38.48
Consensus MFE -31.66
Energy contribution -32.34
Covariance contribution 0.68
Combinations/Pair 1.20
Mean z-score -2.00
Structure conservation index 0.82
SVM decision value 1.54
SVM RNA-class probability 0.962561
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18133909 116 + 22407834
UGGUCCGAAAAAACAAACCGAGGUGGUGAAAAAUUGUACACUUUUUGGACGCGACCAGAGCAGUGUGACCAGCCUCGGGUUGGUCGCAAGUUACCACUAGCGAUGAAUACUCAUCG
.(((..(......)..)))..((((((((....(((((((((((((((......)))))).)))))((((((((...)))))))))))).))))))))..((((((....)))))) ( -42.60)
>DroSec_CAF1 23971 116 + 1
UGUUCCGAAAAAACAAACCGAGGUGGUGAAAAAUUGUACACUUUUUGGACGCGACUAGAGCAGUGUGACCAGCCUCGGGUUGGUAGCAGGUUACCACUAGUGGUGGGUAGUCAUCG
......((....((..((((.((((((((....(((((((((((((((......)))))).))))).(((((((...))))))).)))).))))))))..))))..))..)).... ( -36.60)
>DroSim_CAF1 24653 116 + 1
UGGUCCGAAAAAACAAACCGAGGUGGUGAAAAAUUGUACACUUUUUGGACGCGACCAGAGCAGUGUGACCAGCCUCGGGUUGGUCGCAGGUUACCACUAGCGAUGGGUACCCAUCG
.(((..(......)..)))..((((((((....(((((((((((((((......)))))).)))))((((((((...)))))))))))).))))))))..((((((....)))))) ( -45.60)
>DroEre_CAF1 15295 115 + 1
UGGUCGGAAAAAACAAACCGAGCUGGUGAAAAAUUGUACACUU-AUGGACGCGACCAGAACAGUGUGACCAGUGUCGGGGUGGUCGCAAAUUACCCCUAGCGAUGAGCACUCAUCG
...((((..........))))((((((.........((((((.-.(((......)))....))))))))))))...((((((((.....))))))))...((((((....)))))) ( -34.80)
>DroYak_CAF1 38454 116 + 1
UGGUCGGAAAAAACAAACCGAGCUGGUGAAAAAUUGUACACUUUUUGGACGCGAACAGAGCAGUGUGACCAGUAUCGGGUUGGCCGCAAAUUACCCCUAGCGAUGAGUACUCAUCG
.((((((..........((((((((((.........(((((((((((........))))).)))))))))))).)))).))))))...............((((((....)))))) ( -32.80)
>consensus
UGGUCCGAAAAAACAAACCGAGGUGGUGAAAAAUUGUACACUUUUUGGACGCGACCAGAGCAGUGUGACCAGCCUCGGGUUGGUCGCAAGUUACCACUAGCGAUGAGUACUCAUCG
.(((..(......)..)))..((((((((....(((((((((((((((......)))))).)))))(((((((.....))))))))))).))))))))..((((((....)))))) (-31.66 = -32.34 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:39 2006