Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,133,124 – 18,133,219 |
Length | 95 |
Max. P | 0.990019 |
Location | 18,133,124 – 18,133,219 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 71.32 |
Mean single sequence MFE | -13.38 |
Consensus MFE | -8.33 |
Energy contribution | -7.89 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.18 |
Mean z-score | -1.89 |
Structure conservation index | 0.62 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18133124 95 + 22407834 GCUAUAAAA-UCACAUAGAUCUAAUUCUGCAUAUCAUUAAAAGUCCUAUGUGGGUGCUGUGUGUUCUAUUCUCCAGGGCAGGUACAAAAUAACCAA .........-((((((((..((...................))..))))))))(((((...((((((.......)))))))))))........... ( -16.61) >DroSec_CAF1 23165 73 + 1 GUUAUAAAAGUACCAUAAAUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAGGC-----------------------GGUAUAAAAUAACCAA (((((....((((((((....)))(((((((((.............)))))))))..-----------------------)))))...)))))... ( -12.12) >DroSim_CAF1 23956 73 + 1 GUUAUAAAA-CACCAUAACUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAUGC----------------------AGGUAUAAAAUAACCAA (((((....-....)))))..(((.(((((((.((((..........))))..))))----------------------))).))).......... ( -11.40) >consensus GUUAUAAAA_UACCAUAAAUCUAUUUCUGCAUAACAUUAAAAAUCAUAUGUAGAUGC______________________AGGUAUAAAAUAACCAA .........................((((((((.............))))))))..........................(((........))).. ( -8.33 = -7.89 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006