Locus 6452

Sequence ID 2L_DroMel_CAF1
Location 18,132,157 – 18,132,263
Length 106
Max. P 0.862681
window10307

overview

Window 7

Location 18,132,157 – 18,132,263
Length 106
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 78.80
Mean single sequence MFE -20.54
Consensus MFE -14.12
Energy contribution -13.32
Covariance contribution -0.80
Combinations/Pair 1.25
Mean z-score -1.85
Structure conservation index 0.69
SVM decision value 0.83
SVM RNA-class probability 0.862681
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18132157 106 + 22407834
------AUUAACUGUGCAAAUUAUGGCGCCAUUAAAUGAUGAUGACUACUCGAAAAGACUAAGAUCUUUUGUCUUCAAAAUCGUAAGGUGUUAUAAUUAUAACCCAAUAAAA
------.......((...((((((((((((.....(((((..(((..((...((((((......))))))))..)))..)))))..))))))))))))...))......... ( -20.10)
>DroSec_CAF1 22168 103 + 1
------AUGAACUUUGCAAAUUAUGGCGCCAUUAAAUGAUGAUGACUACUCAAAA---UCUUAGUCUUUUGUCUUCAAAAUCAGAAGGUGUUAUAAUUAUAACCCAAUAAAA
------............((((((((((((.......((..(.(((((.......---...)))))..)..))(((.......))))))))))))))).............. ( -19.40)
>DroSim_CAF1 22960 103 + 1
------AUUAACUUUACAAAUUAUGGCGCUAUUAAAUGAUGAUGACUACUCAAAA---UCAAAGUCUUUUGUCUUCAAAAUAAGAAGGUGCUAUAAUUAUAACCCAAUAAAA
------............(((((((((((.......((((..(((....)))..)---)))...........((((.......))))))))))))))).............. ( -18.80)
>DroEre_CAF1 13464 104 + 1
UGUAAUUUUGGCUGUGCAAAUUAUGGCGCCAUAAAGUCUUGAUGACCACUCGAAA---UCUUAGUCUUUUGUCUUCAAAAUCGAAAGGUGUUAUAAUUAU--AGUAAAG---
..........((((((...(((((((((((.....(((.....)))...((((..---....((.(....).))......))))..))))))))))))))--)))....--- ( -22.70)
>DroYak_CAF1 36677 102 + 1
------UUUAGCUUUGCAAAUUAUGGCGCAAUUAAGUCUUGAUGACCACUCGAAA---UCUUAGUCUUUUACCUUUAAAAUCGU-AGGUGUCAUAAUUAUGAAGCAAAAAAA
------....(((((...(((((((((((......(((.....)))..(((((..---....((........))......))).-)))))))))))))..)))))....... ( -21.70)
>consensus
______AUUAACUUUGCAAAUUAUGGCGCCAUUAAAUGAUGAUGACUACUCGAAA___UCUUAGUCUUUUGUCUUCAAAAUCGGAAGGUGUUAUAAUUAUAACCCAAUAAAA
..................((((((((((((............(((....)))..............(((((....)))))......)))))))))))).............. (-14.12 = -13.32 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:37 2006