Locus 645

Sequence ID 2L_DroMel_CAF1
Location 1,944,472 – 1,944,581
Length 109
Max. P 0.651440
window1052

overview

Window 2

Location 1,944,472 – 1,944,581
Length 109
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 74.28
Mean single sequence MFE -22.49
Consensus MFE -7.00
Energy contribution -6.52
Covariance contribution -0.48
Combinations/Pair 1.33
Mean z-score -1.76
Structure conservation index 0.31
SVM decision value 0.25
SVM RNA-class probability 0.651440
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1944472 109 + 22407834
CCUCCCCAAAAGUCCAG-CUAAGGGUGAACUUUCCUUAAAGCUAAAAGUUAAAUUAACG-ACAUAUUUUUUGGGGCACUGGGCACGGGUAUACAGUAAACUUGAACCCU------UA
...(((((((((((.((-(((((((.......)))))..))))....((((...)))))-)).....))))))))....(((..(((((.........)))))..))).------.. ( -26.10)
>DroSec_CAF1 109157 94 + 1
CCACCCCAAAAGUCCAG-CUAAGGGUGUACUCCACUUAAAGCUAAACGUUAAAUUAACG-ACAUAUUUCAUGGGAC---------------ACAAUAAGUUUAUACCCU------UA
...........((((((-((..(((((.....)))))..))))...(((((...)))))-............))))---------------..................------.. ( -16.70)
>DroSim_CAF1 93094 94 + 1
CCACCCCAGAAGUCCAG-CUAAGGGUGUACUCCACUUAAAGCUAAACGUUAAAUUAACG-ACAUAUUUUUUGGGAC---------------ACAAUAAGCUUAUACCCU------UA
....((((((((...((-((..(((((.....)))))..))))...(((((...)))))-......))))))))..---------------..................------.. ( -19.00)
>DroEre_CAF1 111328 115 + 1
CCAGCCCAAAAGUCCAGCAUGAGGGUGAACUUUCUUUAAAGUUAUCC-CCAAAUUAACG-ACAUAUUCUUUGGGGCACUAGGCACGGGUAUACAAUAAAUUUGUACCCUACCCUUUA
...(((..............(((((....))))).....(((...((-(((((......-........))))))).))).)))..((((((((((.....)))))...))))).... ( -27.64)
>DroYak_CAF1 119735 111 + 1
GCACCCCAAAAGUCCAGGCUAAGGGUGAACUUUCUUUAAAGUUAUAC-CAAAAUUAACAAACAUAUUCUUUGGGGCACUAGGCACGGCUAUACAAUAAACUUGUAGGUUA-----UA
((.((((((((((....)))...((((((((((....)))))).)))-)...................)))))))......))..((((.(((((.....))))))))).-----.. ( -23.00)
>consensus
CCACCCCAAAAGUCCAG_CUAAGGGUGAACUUUCCUUAAAGCUAAACGUUAAAUUAACG_ACAUAUUUUUUGGGGCACU_GGCACGG_UAUACAAUAAACUUGUACCCU______UA
...........((((....((((((.......)))))).......................((.......))))))......................................... ( -7.00 =  -6.52 +  -0.48) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:46 2006