Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,944,472 – 1,944,581 |
Length | 109 |
Max. P | 0.651440 |
Location | 1,944,472 – 1,944,581 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.28 |
Mean single sequence MFE | -22.49 |
Consensus MFE | -7.00 |
Energy contribution | -6.52 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.33 |
Mean z-score | -1.76 |
Structure conservation index | 0.31 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1944472 109 + 22407834 CCUCCCCAAAAGUCCAG-CUAAGGGUGAACUUUCCUUAAAGCUAAAAGUUAAAUUAACG-ACAUAUUUUUUGGGGCACUGGGCACGGGUAUACAGUAAACUUGAACCCU------UA ...(((((((((((.((-(((((((.......)))))..))))....((((...)))))-)).....))))))))....(((..(((((.........)))))..))).------.. ( -26.10) >DroSec_CAF1 109157 94 + 1 CCACCCCAAAAGUCCAG-CUAAGGGUGUACUCCACUUAAAGCUAAACGUUAAAUUAACG-ACAUAUUUCAUGGGAC---------------ACAAUAAGUUUAUACCCU------UA ...........((((((-((..(((((.....)))))..))))...(((((...)))))-............))))---------------..................------.. ( -16.70) >DroSim_CAF1 93094 94 + 1 CCACCCCAGAAGUCCAG-CUAAGGGUGUACUCCACUUAAAGCUAAACGUUAAAUUAACG-ACAUAUUUUUUGGGAC---------------ACAAUAAGCUUAUACCCU------UA ....((((((((...((-((..(((((.....)))))..))))...(((((...)))))-......))))))))..---------------..................------.. ( -19.00) >DroEre_CAF1 111328 115 + 1 CCAGCCCAAAAGUCCAGCAUGAGGGUGAACUUUCUUUAAAGUUAUCC-CCAAAUUAACG-ACAUAUUCUUUGGGGCACUAGGCACGGGUAUACAAUAAAUUUGUACCCUACCCUUUA ...(((..............(((((....))))).....(((...((-(((((......-........))))))).))).)))..((((((((((.....)))))...))))).... ( -27.64) >DroYak_CAF1 119735 111 + 1 GCACCCCAAAAGUCCAGGCUAAGGGUGAACUUUCUUUAAAGUUAUAC-CAAAAUUAACAAACAUAUUCUUUGGGGCACUAGGCACGGCUAUACAAUAAACUUGUAGGUUA-----UA ((.((((((((((....)))...((((((((((....)))))).)))-)...................)))))))......))..((((.(((((.....))))))))).-----.. ( -23.00) >consensus CCACCCCAAAAGUCCAG_CUAAGGGUGAACUUUCCUUAAAGCUAAACGUUAAAUUAACG_ACAUAUUUUUUGGGGCACU_GGCACGG_UAUACAAUAAACUUGUACCCU______UA ...........((((....((((((.......)))))).......................((.......))))))......................................... ( -7.00 = -6.52 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:46 2006