Locus 6449

Sequence ID 2L_DroMel_CAF1
Location 18,123,335 – 18,123,441
Length 106
Max. P 0.530377
window10302

overview

Window 2

Location 18,123,335 – 18,123,441
Length 106
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -29.22
Consensus MFE -21.70
Energy contribution -21.45
Covariance contribution -0.25
Combinations/Pair 1.22
Mean z-score -1.05
Structure conservation index 0.74
SVM decision value -0.01
SVM RNA-class probability 0.530377
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18123335 106 - 22407834
CAUUCGUAAUGUUCGGCUGCUCCAGCGGCUGAGGGUCGUUGUAGCGGCUGCAGGAUGCACAGGGAAAAAAUGGGCAUCACAAAUCAUCAAAUUA--------UGUUACUAAAUU
.....(((((((.((((((((.(((((((.....))))))).))))))))...(((((.((.........)).)))))...............)--------))))))...... ( -33.80)
>DroSec_CAF1 13117 103 - 1
CAUUUGUAAUGUUCGGCUGCUCCAGCGGCUGAGGGUCGUUGUAGCGGCUGCAGGAUGCACAGGGAAAAAAUGGUUAUCACAUC---UCAAGUUA--------UGUAACUAAAUU
..(((((.((.((((((((((.(((((((.....))))))).)))))))).)).))..))))).......(((((((.((...---....))..--------.))))))).... ( -30.40)
>DroSim_CAF1 13937 103 - 1
CAUUCGUAAUGUUCGGCUGCUCCAGCGGCUGAGGGUCGUUGUAGCGGCUGCAGGAUGCACAGGGAAAAAAUGUUCAUCACAUC---UCAAGUUA--------UGUAACUGAAUU
.(((((..((((.((((((((.(((((((.....))))))).))))))))...((((.(((.........))).)))))))).---.).((((.--------...)))))))). ( -32.30)
>DroEre_CAF1 4503 101 - 1
CAUUCGUAAUGUUCGGCUGCUCCAGCGGUUGGGGGUCAUUGUAGCGGCUGCAUGAUGCACAGGGAAA-AAUAGUCA-CACAUC---UCAAGGUU--------UGUUCCUAAGUU
..(((.......((((((((....))))))))(.(((((.((((...))))))))).).....))).-..(((..(-((.(((---....))).--------)))..))).... ( -23.00)
>DroYak_CAF1 27695 110 - 1
CAUUCGUAAUGUUCGGCUGCUCCAGUGGCUGAGGGUCGUUGUAGCGGCUGCAUGAUGCACAGGGAAA-AAUGGUCAUCACAUC---UUAAAUUACAUCUUAGUCUUACUAAGUU
.....(((((...((((((((.(((((((.....))))))).))))))))..(((((..((......-..))..)))))....---....)))))..(((((.....))))).. ( -30.40)
>DroAna_CAF1 11591 90 - 1
CAUUUGUGAUAUUCGGCUGCUCCAGUGGCUGGGGGUCGUUGUUGCGGCUGUUCAGUACACAGAGAAA-AAUC---AU----------UAAAUU----------GAUAUUAAAUG
..((((((.(((((((((((..(((((((.....)))))))..)))))))...))))))))))....-.(((---(.----------.....)----------)))........ ( -25.40)
>consensus
CAUUCGUAAUGUUCGGCUGCUCCAGCGGCUGAGGGUCGUUGUAGCGGCUGCAGGAUGCACAGGGAAA_AAUGGUCAUCACAUC___UCAAAUUA________UGUUACUAAAUU
.....(((.....((((((((.(((((((.....))))))).)))))))).....)))........................................................ (-21.70 = -21.45 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:32 2006