Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,122,665 – 18,122,775 |
Length | 110 |
Max. P | 0.654574 |
Location | 18,122,665 – 18,122,775 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.24 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -25.32 |
Energy contribution | -24.30 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.33 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18122665 110 + 22407834 ACAAGCUGCGUAUCAAUGAGAACCUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGCGAUAGGAAGUCGCCCUACUCCAAGCGCAAUAUCCAGGAAACGAACAAGUGAGU----------A ((..(((((((......(((.....((((((((((......)))))))))).(((((((.....)))))))..)))...))))........(....).....)))..))----------. ( -32.10) >DroVir_CAF1 14512 110 + 1 ACAAGCUGCGUAUCAAUGAGCAAUUGAUGGCCAUUGGAAUUGAUGGUUAUUUGGGUGAUAGGAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAACGAACAAGUGAGU----------G ....(((.(((....))))))....((((((((((......)))))))))).(((((((.....)))))))((((((....(((...))).(....)......).))))----------) ( -28.20) >DroGri_CAF1 13200 110 + 1 ACAAGCUACGUAUCAAUGAGCAUUUGAUGGCCAUUGGAAUUGAUGGAUAUUUGGGUGAUAGAAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAAUGAGCAAGUGAGU----------A ....(((((((.((((((.((........))))))))......((((.....(((((((.....)))))))...)))).))))..(((.......))))))........----------. ( -27.20) >DroWil_CAF1 37119 110 + 1 AUAAGCUACGUAUCAAUGAGAAUUUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGUGAUAGAAAAUCGCCAUAUUCGAAGCGUAACAUCCAGGAAACGAAUAAGUGAGU----------A ....(.(((((.((...........((((((((((......))))))))))..((((((.....))))))......)).))))).).....(....)............----------. ( -25.60) >DroMoj_CAF1 16811 110 + 1 ACAAGCUGCGUAUCAAUGAGCAAUUGAUGGUCAUUGGAAUUGAUGGCUAUUUGGGUGAUAGAAAAUCGCCCUAUUCGAAGCGCAACAUACAGGAAACGAAUAAGUGAGU----------A ((..(((((((.((...........((((((((((......)))))))))).(((((((.....))))))).....)).))))........(....).....)))..))----------. ( -30.90) >DroAna_CAF1 10993 120 + 1 AUAAGCUACGUAUCAAUGAGAACCUGAUGGCCAUUGCAAUCGAUGGUUAUUUGGGCGAUAGGAAGUCGCCCUACUCCAAGCGGAACAUACAGGAAACGAACAAGUGAGUACUAAGGACUA .........(((((........((((((((((((((....))))))))))..(((((((.....)))))))...(((....))).....))))..((......)))).)))......... ( -30.50) >consensus ACAAGCUACGUAUCAAUGAGAAAUUGAUGGCCAUUGCAAUUGAUGGUUAUUUGGGUGAUAGAAAAUCGCCCUACUCCAAGCGUAACAUACAGGAAACGAACAAGUGAGU__________A ....(.(((((......(((.....((((((((((......)))))))))).(((((((.....)))))))..)))...))))).).....(....)....................... (-25.32 = -24.30 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:31 2006