Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,111,518 – 18,111,636 |
Length | 118 |
Max. P | 0.981826 |
Location | 18,111,518 – 18,111,636 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 97.74 |
Mean single sequence MFE | -32.37 |
Consensus MFE | -30.60 |
Energy contribution | -30.93 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -3.27 |
Structure conservation index | 0.95 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18111518 118 + 22407834 AUGGAGAGUGGAAAUUCAAUUAUUUAACGCUGUUGUUUAUUAAAGGAAGUGUCACAAACCGCAUCUGCGCCGGUGUUUGGCACACAAAAUUAUUAAAAUUAUUUCCACUCUCACUUGA ...((((((((((((((..(((...((((....))))...)))..)))((((((...(((((......).))))...))))))..................)))))))))))...... ( -34.10) >DroSec_CAF1 941 118 + 1 AUGGAGAGUGGAAAUGCAAUUAUUUAACGCUAUUGUUUAUUAAAGGAAGUGUCACAAACCGCAUCUGCGCUUGUGUUUGGCACACAAAAUUAUUAAAAUUAUUUCCACUCUCACUUGA ...(((((((((((((...(((...((((....))))...))).....((((..((((((((....))).....)))))..))))..............)))))))))))))...... ( -31.50) >DroSim_CAF1 1027 118 + 1 AUGGAGAGUGGAAAUGCAAUUAUUUAACGCUAUUGUUUAUUAAAGGAAGUGUCACAAACCGCAUCUGCGCUUGUGUUUGGCACACAAAAUUAUUAAAAUUAUUUCCACUCUCACUUGA ...(((((((((((((...(((...((((....))))...))).....((((..((((((((....))).....)))))..))))..............)))))))))))))...... ( -31.50) >consensus AUGGAGAGUGGAAAUGCAAUUAUUUAACGCUAUUGUUUAUUAAAGGAAGUGUCACAAACCGCAUCUGCGCUUGUGUUUGGCACACAAAAUUAUUAAAAUUAUUUCCACUCUCACUUGA ...(((((((((((((...(((...((((....))))...))).....((((..((((((((....))).....)))))..))))..............)))))))))))))...... (-30.60 = -30.93 + 0.33)
Location | 18,111,518 – 18,111,636 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 97.74 |
Mean single sequence MFE | -35.13 |
Consensus MFE | -32.25 |
Energy contribution | -32.25 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -4.43 |
Structure conservation index | 0.92 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18111518 118 - 22407834 UCAAGUGAGAGUGGAAAUAAUUUUAAUAAUUUUGUGUGCCAAACACCGGCGCAGAUGCGGUUUGUGACACUUCCUUUAAUAAACAACAGCGUUAAAUAAUUGAAUUUCCACUCUCCAU ....(.((((((((((((....(((((.((((..((((((.......))))))(((((.((((((.............))))))....))))))))).)))))))))))))))))).. ( -36.12) >DroSec_CAF1 941 118 - 1 UCAAGUGAGAGUGGAAAUAAUUUUAAUAAUUUUGUGUGCCAAACACAAGCGCAGAUGCGGUUUGUGACACUUCCUUUAAUAAACAAUAGCGUUAAAUAAUUGCAUUUCCACUCUCCAU ....(.((((((((((((............(((((((.....))))))).((((((((.((((((.............))))))....))))).......)))))))))))))))).. ( -34.63) >DroSim_CAF1 1027 118 - 1 UCAAGUGAGAGUGGAAAUAAUUUUAAUAAUUUUGUGUGCCAAACACAAGCGCAGAUGCGGUUUGUGACACUUCCUUUAAUAAACAAUAGCGUUAAAUAAUUGCAUUUCCACUCUCCAU ....(.((((((((((((............(((((((.....))))))).((((((((.((((((.............))))))....))))).......)))))))))))))))).. ( -34.63) >consensus UCAAGUGAGAGUGGAAAUAAUUUUAAUAAUUUUGUGUGCCAAACACAAGCGCAGAUGCGGUUUGUGACACUUCCUUUAAUAAACAAUAGCGUUAAAUAAUUGCAUUUCCACUCUCCAU ....(.((((((((((((................(((((.........)))))(((((.((((((.............))))))....)))))..........))))))))))))).. (-32.25 = -32.25 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:28 2006