Locus 6444

Sequence ID 2L_DroMel_CAF1
Location 18,106,480 – 18,106,576
Length 96
Max. P 0.906687
window10292

overview

Window 2

Location 18,106,480 – 18,106,576
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.17
Mean single sequence MFE -23.65
Consensus MFE -13.57
Energy contribution -14.80
Covariance contribution 1.23
Combinations/Pair 1.30
Mean z-score -2.33
Structure conservation index 0.57
SVM decision value 1.05
SVM RNA-class probability 0.906687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18106480 96 - 22407834
UCUGCUGAGUUUACACGCCAUGCCGGUG------UGCUCAUUAUUUAUUAAUUGCAUUUAAUACUGAUGCAAAUAAAGCACAUCUCGGUAACA-AUUUUGCCA-
..(((((((....((((((.....))))------)))))........(((.(((((((.......))))))).)))))))......(((((..-...))))).- ( -24.80)
>DroSec_CAF1 19419 96 - 1
UCUGCUGAGUUUACACGCCAUGCCGGUG------UGCUCAUUAUUUAUUAAUUGCAUUUAAUACUGAUGCAAAUUAAGCACAACUCGGUAACA-AUUUUGCCU-
..(((((((((..((((((.....))))------))...........(((((((((((.......))))).))))))....)))))))))...-.........- ( -25.40)
>DroSim_CAF1 19565 96 - 1
UCUGCUGAGUUUACACGCCAUGCCGGUG------UGCUCAUUAUUUAUUAAUUGCAUUUAAUACUGAUGCAAAUUAAGCACAACUCGGUAACA-AUUUUGCCA-
..(((((((((..((((((.....))))------))...........(((((((((((.......))))).))))))....)))))))))...-.........- ( -25.40)
>DroEre_CAF1 27515 97 - 1
UCUGCUGAGUUUACACGCCAUGCCGGUG------UGCCCAUUAUUUAUUAAUUGCAUUUAAUACUGAUGCAAAUUACGCUCAACUCGGCAACAUGUUUUGC-AG
..(((((((((..((((((.....))))------))...............(((((((.......))))))).........)))))))))...........-.. ( -27.00)
>DroYak_CAF1 19797 98 - 1
UCUGCUGAGUUUACUCGCCAUGCCGGUG------UGCUCAUUAUUUAUUAAUUGCAUUUAAUACCAAUGUAAAUUACGCUUAGCUCGGCAACAUAUUUUGCCAG
...(((((((...(.((((.....))))------.)...............(((((((.......))))))).....)))))))..(((((......))))).. ( -23.00)
>DroAna_CAF1 25724 91 - 1
U---------UUAGAAGUC--UCCGGUGCAAUGGCUCUCGUUAUUAAAUAAUUAGAUCUAAUGUUGAUAGAAAUUGUGCACAGUUCUGGAACG-CAGUUGUCA-
(---------((((((.(.--....(..((((..((.(((.(((((.((......)).))))).))).))..))))..)..).)))))))...-.........- ( -16.30)
>consensus
UCUGCUGAGUUUACACGCCAUGCCGGUG______UGCUCAUUAUUUAUUAAUUGCAUUUAAUACUGAUGCAAAUUAAGCACAACUCGGUAACA_AUUUUGCCA_
..(((((((((....((((.....)))).......................(((((((.......))))))).........))))))))).............. (-13.57 = -14.80 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:22 2006