Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,104,557 – 18,104,647 |
Length | 90 |
Max. P | 0.808663 |
Location | 18,104,557 – 18,104,647 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.74 |
Mean single sequence MFE | -15.60 |
Consensus MFE | -11.07 |
Energy contribution | -11.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.71 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18104557 90 + 22407834 ---------------------AGCUGCUCCGAAAUCGUGGCACACAUUCAGCAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUGAAGUGGUUGACUAAAUAUUGAAAU ---------------------.(.(((..((....))..))))..............((((((....(((((.((((((..........)))))).))))).))))))... ( -17.90) >DroVir_CAF1 30796 93 + 1 UA------CUA------------CAACAACAAAAUGACAACAAGUAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUCGACUAAAUAUUGAAAU ..------...------------..................................((((((....(((((..(((((..........)))))..))))).))))))... ( -11.40) >DroPse_CAF1 30805 108 + 1 UGGCAGAGCACAGACAAU---GGCAACACCAGAAUGAUAACAAACAUUUAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU (((....((.((.....)---)))....)))(((((........)))))........((((((....(((((.((((((..........)))))).))))).))))))... ( -16.90) >DroGri_CAF1 25159 101 + 1 G-------GCGAUACAAUAAU---AACAACAGAAUGACAACAAGUAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUCGACUAAAUAUUGAAAU .-------......(((((..---.......(((((........)))))..................(((((..(((((..........)))))..))))).))))).... ( -15.50) >DroAna_CAF1 23588 88 + 1 ---------------------AG--GCGCCAAAAUAAUAGCAAACAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUGAAGUGGUUGACUAAAUAUUGAAAU ---------------------..--((............))................((((((....(((((.((((((..........)))))).))))).))))))... ( -12.20) >DroPer_CAF1 31037 108 + 1 UGGCAGUGCACAGACAAU---GGCAACACCAGAAUGAUAACAAACAUUUAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU (((...(((.((.....)---))))...)))(((((........)))))........((((((....(((((.((((((..........)))))).))))).))))))... ( -19.70) >consensus U_______C_____________GCAACACCAAAAUGAUAACAAACAUUCAACAAUAAUUAAUAAUCAUUAGUAAGCCGCACAUUAUUAAGUGGUUGACUAAAUAUUGAAAU .........................................................((((((....(((((.((((((..........)))))).))))).))))))... (-11.07 = -11.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:21 2006