Locus 6442

Sequence ID 2L_DroMel_CAF1
Location 18,100,725 – 18,100,831
Length 106
Max. P 0.962553
window10290

overview

Window 0

Location 18,100,725 – 18,100,831
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -35.00
Consensus MFE -35.00
Energy contribution -35.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 1.00
SVM decision value 1.54
SVM RNA-class probability 0.962553
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18100725 106 - 22407834
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. ( -35.00)
>DroSec_CAF1 13777 106 - 1
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. ( -35.00)
>DroSim_CAF1 13847 106 - 1
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. ( -35.00)
>DroEre_CAF1 21748 106 - 1
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. ( -35.00)
>DroYak_CAF1 14107 106 - 1
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. ( -35.00)
>consensus
CAAAUGCACUGCAGGUUGCAGGUUAAAUGUAGCACGUUGCAGGUUGCUGGUUGGCGGAUACCCACCGAAACCCGGUGACUGAUUCAAAGUUUUAUUUGGCAGCAAG
....(((.((((.....))))((((((((.(((...(((..(((..((((((((.((....)).))))...))))..)))....))).))).)))))))).))).. (-35.00 = -35.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:20 2006