Locus 6441

Sequence ID 2L_DroMel_CAF1
Location 18,100,398 – 18,100,502
Length 104
Max. P 0.980916
window10289

overview

Window 9

Location 18,100,398 – 18,100,502
Length 104
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.25
Mean single sequence MFE -34.90
Consensus MFE -23.84
Energy contribution -23.89
Covariance contribution 0.06
Combinations/Pair 1.17
Mean z-score -2.74
Structure conservation index 0.68
SVM decision value 1.87
SVM RNA-class probability 0.980916
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18100398 104 - 22407834
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUGGUCUGAGCUUCUUAACUUGGCU-UGAAGCGAUGCGAGCGUGACACACAAACACGCCCUGAUUCG-----AGGCUA
(((((((((((....((.....))(((.((((.....))))(((((...........-.)))))..))))))))))))))........((((......)-----.))).. ( -38.10)
>DroPse_CAF1 26639 86 - 1
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUUG---------CUUAAGUUGGCUUUUGAGGGAUGCGAGCGUGACACAUAAAUACG---------------AUGUUA
(((((((((((....((.....))(((.((((...(---------((......)))..))))....)))))))))))))).........---------------...... ( -30.10)
>DroEre_CAF1 21403 104 - 1
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUGGCCUGAGCUUCUUAACUUGGCU-UGAAGCGAUGCGAGCGUGGCGCACAAACACGUCUUGAUUCG-----GGGCUA
(((((((((((....((.....))(((.((((.....))))(((((...........-.)))))..))))))))))))))........((((((...))-----)))).. ( -36.70)
>DroYak_CAF1 13781 104 - 1
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUGGCCUGAGCUUCUUAACUUGGCU-UGAAGCGAUGCGAGCGUGACACACAAACACGCCUUGAUUCG-----AGGCUA
(((((((((((....((.....))(((.((((.....))))(((((...........-.)))))..))))))))))))))........((((((...))-----)))).. ( -41.20)
>DroAna_CAF1 19934 101 - 1
GUGUCAUGCUCUGAUGCUCAUUGCGCAAUCAGUUUGCCU--------UAGCCGGGCU-GGGAGGGAUGCGAGCGUGACACACAAAUGUGUCUUGAUUCGUCCUUACGCUA
(((((((((((....((.....))(((.((..(((((((--------.....)))).-)))..)).))))))))))))))......((((...((....))...)))).. ( -33.20)
>DroPer_CAF1 26847 86 - 1
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUUG---------CUUAAGUUGGCUUUUGAGGGAUGCGAGCGUGACACAUAAAUACG---------------AUGUUA
(((((((((((....((.....))(((.((((...(---------((......)))..))))....)))))))))))))).........---------------...... ( -30.10)
>consensus
GUGUCAUGCUCUAAUGCUCAUUGCGCAAUCAGUUGGCCU______CUUAACUUGGCU_UGAAGCGAUGCGAGCGUGACACACAAACACG_CUUGAUUCG_____AGGCUA
(((((((((((....((.....))(((.((..((.(((...............)))....))..)))))))))))))))).............................. (-23.84 = -23.89 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:19 2006