Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,085,524 – 18,085,672 |
Length | 148 |
Max. P | 0.598831 |
Location | 18,085,524 – 18,085,632 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.11 |
Mean single sequence MFE | -36.25 |
Consensus MFE | -25.80 |
Energy contribution | -25.68 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.46 |
Structure conservation index | 0.71 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18085524 108 + 22407834 UCGAGAGGGAAAGUAGUCGAAGACGAUGUCGAUGUCG------------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAA (((((...........((((..((((((((((...((------------((((.((.(((.......))))).)))))).)))))))))).)))).(((((....)))))...))))).. ( -34.00) >DroSec_CAF1 292858 108 + 1 UCGAGAGGGGAAGUAGUCGAAGGCGAUGUCGAUGUCG------------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAA (((((...(...(((((((...((....((((((.((------------(((((((((.....(((....))).....))))))))))))))))).))...))))))).)...))))).. ( -36.00) >DroSim_CAF1 294904 108 + 1 UCGAGAGGGAAAGCAGUCGAAGGCGAUGUCGAUGUCG------------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAA (((((...........((((..((((((((((...((------------((((.((.(((.......))))).)))))).)))))))))).)))).(((((....)))))...))))).. ( -34.30) >DroYak_CAF1 310294 120 + 1 UCGAGAGGGAAAGUAGUCGAAAGCAAUGUCGAUGUCGAUGCCGAUGCCGAUGUCGGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAA (((((...(...(((((((...((....((((((.(((((((((...((((((.((.(((.......))))).)))))).))))))))))))))).))...))))))).)...))))).. ( -40.70) >consensus UCGAGAGGGAAAGUAGUCGAAGGCGAUGUCGAUGUCG____________AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAA (((((...........((((..((((((((((.................((((.((.(((.......))))).))))...)))))))))).)))).(((((....)))))...))))).. (-25.80 = -25.68 + -0.12)
Location | 18,085,561 – 18,085,672 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -32.67 |
Consensus MFE | -29.23 |
Energy contribution | -28.85 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.89 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18085561 111 + 22407834 ---------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAAGGCAAUUUCCCCAGUGUUCUGGUCAUCGAUGCAAAUGCAA ---------..(((((..(....)..))))).....((((...((((((((((((((((((((......)))....((((.....))))....))))))))).)).))))))....)))) ( -29.70) >DroSec_CAF1 292895 111 + 1 ---------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAAGGCAAUUUCCCCAGUGUUUUGGUCAUCGAUGCAAAUGCAA ---------......((((((((..(((((.....((((((((((.....)))...(((((....))))).........)))))))....))))).)))))))).....(((....))). ( -31.00) >DroSim_CAF1 294941 111 + 1 ---------AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAAGGCAAUUUCCCCAGUGUUCUGGUCAUCGAUGCAAAUGCAA ---------..(((((..(....)..))))).....((((...((((((((((((((((((((......)))....((((.....))))....))))))))).)).))))))....)))) ( -29.70) >DroYak_CAF1 310334 120 + 1 CCGAUGCCGAUGUCGGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAAGGCAAUUUCCCCAGUGUUCUGGUCAUCGAUGCAAAUGCAA (((((((.((((((((((.....(((....))).....))))))))))))))))).(((((((((((.((((....((((.....))))....))))..)))))))..))))........ ( -40.30) >consensus _________AUGUCAGACCAAAAGAGCUGGCUCACAUUGUUUGGCAUCGUGUCGGAGCAUAUGACUAUGCAUAUUUGAAAGGCAAUUUCCCCAGUGUUCUGGUCAUCGAUGCAAAUGCAA ...........(((((..(....)..))))).....((((...((((((((((((((((((((......)))....((((.....))))....))))))))).)).))))))....)))) (-29.23 = -28.85 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:12 2006