Locus 6435

Sequence ID 2L_DroMel_CAF1
Location 18,084,429 – 18,084,548
Length 119
Max. P 0.889147
window10272

overview

Window 2

Location 18,084,429 – 18,084,548
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.37
Mean single sequence MFE -26.96
Consensus MFE -18.32
Energy contribution -19.70
Covariance contribution 1.38
Combinations/Pair 1.07
Mean z-score -2.49
Structure conservation index 0.68
SVM decision value 0.95
SVM RNA-class probability 0.889147
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18084429 119 - 22407834
UGGCAGCUAAAUUUAACAUACAUUUUUCACAAUGCUUUCAUAAACUACUUUGAGCUUUG-CCAACCUCUAUGAAAAUGUAGAAAUAUUUUAUGCAGGUAUUUCUAUAGCAAUCAGCUGUA
..((((((...............(((((((((.((((..............)))).)))-..........))))))(((((((((((((.....)))))))))))))......)))))). ( -23.44)
>DroSec_CAF1 291784 107 - 1
UGGCAGCUAAAUUUAACAAACAUUUUUCGCUAUGCUUUCAUAAACUAC-------------CAAGCUCUAUGGAAGUGUAGAAAUAUUUUAUGCAGGUAUUUCUAUAACAAUGAGCUGUA
..((((((.........................(((((((((..((..-------------..))...)))))))))((((((((((((.....)))))))))))).......)))))). ( -24.80)
>DroSim_CAF1 293807 120 - 1
UGGCAGCUAAAUUUAACAUACAUUUUUCACUAUGCUUUCAUAAACUACUUUGAGCUUUGUCCAAGCUCUAUGAAAGUGUAGAAAUAUUUUAUGCAGGUAUUUCUAUAGCAAUGAGCUGUA
..((((((.........................(((((((((.........((((((.....)))))))))))))))((((((((((((.....)))))))))))).......)))))). ( -31.40)
>DroYak_CAF1 309201 120 - 1
UGGCAGCUAAAUUUAACAUACAUUUUUCACAAUGCUUUCAUAAACUACUUUGGGGGUUUGCGAAGCUCUAUGAAAACGUAGCCAUAUUUUAUGCAGUCAUUUCUAGAGCAAUAAGCUGUA
..((((((.................(((.(((.(((..((..........))..)))))).)))((((((.(((((((((...........))).))..))))))))))....)))))). ( -28.20)
>consensus
UGGCAGCUAAAUUUAACAUACAUUUUUCACAAUGCUUUCAUAAACUACUUUGAGCUUUG_CCAAGCUCUAUGAAAAUGUAGAAAUAUUUUAUGCAGGUAUUUCUAUAGCAAUGAGCUGUA
..((((((.........................(((((((((..........................)))))))))((((((((((((.....)))))))))))).......)))))). (-18.32 = -19.70 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:03 2006