Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,082,093 – 18,082,213 |
Length | 120 |
Max. P | 0.884850 |
Location | 18,082,093 – 18,082,213 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -32.05 |
Consensus MFE | -29.36 |
Energy contribution | -28.67 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.14 |
Mean z-score | -1.78 |
Structure conservation index | 0.92 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18082093 120 + 22407834 UUUAGGCUAACAAAGCCAUAAUCUCGCUAAUCAAUGGGAAUAUUUGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC .((((((........(((...(((((........))))).....)))(((((.((((.((((((.....))..(((((......))))))))).)))).))))).........)))))). ( -31.10) >DroSec_CAF1 289438 120 + 1 UUCAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC ....((((.....))))........(((((.(((...((....))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) ( -34.10) >DroSim_CAF1 291428 120 + 1 UUAAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC ....((((.....))))........(((((.(((...((....))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) ( -34.10) >DroYak_CAF1 306847 120 + 1 UUAAGGCUAACCAAGCAAUAAAUUCGCUAAUCACUACGAAAAUGUUGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUAAAGGCCUGGUCAUAAAAAAUGCAAAUUACGUGCUUGGC ..........((((((......((((..........)))).((((..(((((.((((.(((((...........((((......))))))))).)))).))))).....)))))))))). ( -28.90) >consensus UUAAGGCUAACAAAGCCAUAAUCUCGCUAAUCACUGGGAAUAUUCGGGCAUUGUUUAAGGCCAUAAUCAGUCAGGGCUCUUUAAGGCCCGGCCAUAAAAAAUGCAAAUUACGUGCUUGGC ....((((.....))))........(((((.(((.(((....)))..(((((.((((.((((((.....))..(((((......))))))))).)))).))))).......))).))))) (-29.36 = -28.67 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:57 2006