Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,942,617 – 1,942,733 |
Length | 116 |
Max. P | 0.507697 |
Location | 1,942,617 – 1,942,733 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -21.90 |
Energy contribution | -22.86 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.11 |
Mean z-score | -1.61 |
Structure conservation index | 0.74 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507697 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1942617 116 + 22407834 ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGCAUUCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA ....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((..(((.......)))))))).).))))))..))))))). ( -28.80) >DroSec_CAF1 107323 116 + 1 ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUUAUAGUUUAGUGUGAAUCUACAGCCUGCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA ....((((........))))......(((((((((((.(((....))).(..(.((((((((..((((.............))))....)))))))).)..)))))..))))))). ( -27.62) >DroSim_CAF1 91249 116 + 1 ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUGUGAAUCUACAGCCUGCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA ....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((.((........))..))))).).))))))..))))))). ( -27.80) >DroEre_CAF1 109487 116 + 1 ACGCCCUCAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAGUCUACGGUUUUCAAAUAAAGAACUGUAUGCUCAUGCAAUGCUCCUG ................(((((...(((...)))((((...(((((.....)))))........((((((((.(((((((((.......))))))))).)))))))).))))))))) ( -33.80) >DroYak_CAF1 117893 116 + 1 ACGCCCUCAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCCCCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGUUGUGAACAAAAGAACUGUAUGCUCAUGCGAUGCUACGG .((......(((.((((.(((...((((....)))))))((....))..)))))))((((...((((((.(.(((((((.(.......).))))))).).))))))...)))))). ( -29.20) >consensus ACGCCCUGAUCAUGUCCAGGAAUAUGCUAAGCAGCAUCACCAAUCGGUAGGAUUGAUAGUUUAGUAUGAAUCUACAGCCUUCACAAAAAGAACUGUAUACUCAUGCAAUGCUUAGA ....((((........))))......(((((((.......(((((.....)))))........((((((.(.(((((...............))))).).))))))..))))))). (-21.90 = -22.86 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:44 2006