Locus 6427

Sequence ID 2L_DroMel_CAF1
Location 18,074,820 – 18,074,914
Length 94
Max. P 0.600033
window10254

overview

Window 4

Location 18,074,820 – 18,074,914
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 82.92
Mean single sequence MFE -29.88
Consensus MFE -21.22
Energy contribution -21.55
Covariance contribution 0.33
Combinations/Pair 1.21
Mean z-score -1.71
Structure conservation index 0.71
SVM decision value 0.13
SVM RNA-class probability 0.600033
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18074820 94 + 22407834
CAAUUAAUAAG---CGUCCUCUUGCAGAUGGAAUCAUUGUGCUGGACGAUGAGUACGUGCGCCAGAACCGCAAGAUCUUCGUGCAGUUGGUCUGCAA
...........---........(((((((.((.(((((((.....))))))).....(((((.(((..(....).)))..))))).)).))))))). ( -26.10)
>DroVir_CAF1 361677 97 + 1
CAAUUAAUUUCGUUCGUCCAUUUGCAGAUGGCAUCAUUGUGCUGGAUGAUGACUACGUGCGUCAGAACCGCAAGAUCUUCGUGCAGCUUGUGUGCAA
..............((((........))))(((.(((...((((.((((.((.....((((.......))))...)).)))).))))..)))))).. ( -24.00)
>DroGri_CAF1 374905 85 + 1
CAAUUAAUU------------UUGCAGAUGGCAUCAUCGUCCUGGACGAUGAGUAUGUGCGUACGAAUCGCAAGAUCUUUGUGCAGCUCGUCUGCAA
.........------------(((((((((((.((((((((...))))))))........(((((((((....)))..)))))).)).))))))))) ( -35.30)
>DroMoj_CAF1 426301 97 + 1
CAAUUAAUUUCGCAUGUCCAUUUGCAGAUGGCAUCAUUGUGCUGGACGAUGAGUACGUGCGACAGAAUCGCAAGAUCUUCGUGCAGCUCGUCUGCAA
...........(((.(((((...(((((((....)))).))))))))(((((((..(..(((.(((.((....))))))))..).)))))))))).. ( -34.80)
>DroAna_CAF1 265787 94 + 1
CGAUUAAUUAG---CAUCUACUUGCAGAUGGAAUCGUGGUGCUGGACGACGAGUACGUGCGCCAGAACCGCAAGAUCUUCGUGCAGCUGGUUUGCAA
..........(---((.(((.(((((((.(((.(((((((.((((.(((((....))).)))))).)))))..))))))).))))).)))..))).. ( -30.40)
>DroPer_CAF1 376391 95 + 1
CAAUUAAUUAGG--CUUCCCUUUGCAGACGGCAUCGUGGUCCUGGACGAUGAGUACGUGCGCCAGAACCGCAAGAUCUUUGUGCAGCUGGUGUGCAA
...........(--(..((..(((((.(.((.((((((((.((((.(((((....))).)))))).)))))..))))).).)))))..))...)).. ( -28.70)
>consensus
CAAUUAAUUAG___CGUCCAUUUGCAGAUGGCAUCAUUGUGCUGGACGAUGAGUACGUGCGCCAGAACCGCAAGAUCUUCGUGCAGCUGGUCUGCAA
.....................((((((((.((......))((((.((((.((.....((((.......))))...)).)))).))))..)))))))) (-21.22 = -21.55 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:43 2006