Locus 6426

Sequence ID 2L_DroMel_CAF1
Location 18,070,813 – 18,070,910
Length 97
Max. P 0.985372
window10253

overview

Window 3

Location 18,070,813 – 18,070,910
Length 97
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 95.74
Mean single sequence MFE -28.78
Consensus MFE -26.36
Energy contribution -26.12
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.72
Structure conservation index 0.92
SVM decision value 2.00
SVM RNA-class probability 0.985372
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18070813 97 - 22407834
C----GCCAUAAAUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCGAGCCAAUUCGCUCC
.----(((((...(((....))).(.(((((((.....)))))))).......))))).(((((((..........)))))))((((((....)))))).. ( -29.30)
>DroSec_CAF1 278014 97 - 1
C----GCCAUAAAUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCUAGCCAAUUCGCUCC
.----.........((((((((..(.(((((((.....))))))))........((((.(((((((..........))))))).))))))).))).))... ( -26.90)
>DroSim_CAF1 279994 97 - 1
C----GCCAUAAAUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCUAGCCAAUUCGCUCC
.----.........((((((((..(.(((((((.....))))))))........((((.(((((((..........))))))).))))))).))).))... ( -26.90)
>DroEre_CAF1 270943 97 - 1
C----ACCAUAAAUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCGGGCCAAUUCGCUCC
.----(((((.......)))))..(.(((((((.....))))))))...(((..((((((((((((..........)))))))....))))).)))..... ( -28.70)
>DroYak_CAF1 287593 101 - 1
CGCCCACCAUAAGUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCGGGCCAAUUCGUUCC
.(((((((((...(((....))).(.(((((((.....)))))))).......))))).(((((((..........)))))))...))))........... ( -32.10)
>consensus
C____GCCAUAAAUGCAAUGGUAAGACAUCCGAGUGCAUCGGAUGCAAAGAAAGUGGUCGGAAAGUGCGAAAAUAUGCUUUCCAGCGAGCCAAUUCGCUCC
.....(((((...(((....))).(.(((((((.....)))))))).......))))).(((((((..........)))))))((((((....)))))).. (-26.36 = -26.12 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:42 2006