Locus 6425

Sequence ID 2L_DroMel_CAF1
Location 18,069,917 – 18,070,019
Length 102
Max. P 0.500000
window10252

overview

Window 2

Location 18,069,917 – 18,070,019
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 81.26
Mean single sequence MFE -22.52
Consensus MFE -12.60
Energy contribution -13.60
Covariance contribution 1.00
Combinations/Pair 1.24
Mean z-score -1.84
Structure conservation index 0.56
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18069917 102 + 22407834
GCUGAAUGUGAUUAAUGAAUAUGAGAGCUCUGCACACAGAGUAGUCACAGCAGUGCUGGCAAAUCAUGGUUAA--AUCAGUAAAAAUAGUG-UUUAAACACGUAA
(((((...((((((.(((...(((..((((((....))))))..)))((((...)))).....))))))))).--.))))).......(((-(....)))).... ( -25.90)
>DroSec_CAF1 277119 102 + 1
GCUGAAUGUGAUUAAUGAAGUUGAGAGCUCUGCACACAGAGUAGUCACAGCAGUGCUGGCAAAUCAUGGCUAA--GUCAGCAAAAAUAAUU-UGUAAAUACAUAA
......(((((((.(..((((((.((((((((....))))))..)).))))..(((((((.............--))))))).......))-..).))).)))). ( -24.32)
>DroSim_CAF1 279104 102 + 1
GCUAAAUGUGAUUAAUGAAGUUGAGAGCUCUGCACACAGAGUAGUCACAGCAGUGCUGGCAAAUCAUGGCUAA--AUCAGCAAAAAAAGUU-UUUAAAUACAUAA
.....(((((.((((....((((.((((((((....))))))..)).))))..(((((((........))...--..))))).........-.)))).))))).. ( -21.40)
>DroEre_CAF1 269869 100 + 1
GCUGAUUGUG---AAUAUAGUUGAGAGCUCUGCAGUAAGAGUAGUCACAGCAGUC--AAAAAAUCAUGGUCAAAAACCAAUAUAGAUAGUUUUAUAAAUACAUAA
..(((((.((---(.....((((.(((((((......)))))..)).))))..))--)...)))))((((.....)))).((((((....))))))......... ( -19.00)
>DroYak_CAF1 286752 103 + 1
UCUGAACAUGAUUAAUGAAGUUGAGAGCUCUGUGCACAGAGUAGUCACAACAGUGCUUGCAAAUCUUGGUCAA--AUCAGGAUACACAGUUAUAUAAAUACAUAA
(((((...(((((((.((.((((.((((((((....))))))..)).)))).((....))...))))))))).--.)))))........................ ( -22.00)
>consensus
GCUGAAUGUGAUUAAUGAAGUUGAGAGCUCUGCACACAGAGUAGUCACAGCAGUGCUGGCAAAUCAUGGUUAA__AUCAGCAAAAAUAGUU_UAUAAAUACAUAA
(((((..............((((.((((((((....))))))..)).)))).....((((........))))....)))))........................ (-12.60 = -13.60 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:41 2006