Locus 6423

Sequence ID 2L_DroMel_CAF1
Location 18,067,229 – 18,067,323
Length 94
Max. P 0.930797
window10250

overview

Window 0

Location 18,067,229 – 18,067,323
Length 94
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -27.44
Consensus MFE -10.02
Energy contribution -10.88
Covariance contribution 0.86
Combinations/Pair 1.29
Mean z-score -2.10
Structure conservation index 0.37
SVM decision value 1.21
SVM RNA-class probability 0.930797
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18067229 94 + 22407834
AAACAUUUGAAUUUAUGCAUAGGGCUUGUAAAAGCCCCUCCAUUCCAC--GGGCAACCGGAGUUUCCACUCGUAAGGGCG-ACUGGAGCAU-UGAAAA
...........((.((((...((((((....))))))....(((((..--((....))))))).((((.((((....)))-).))))))))-.))... ( -29.80)
>DroVir_CAF1 351276 75 + 1
AAGCAUUUGAAUUUAUGCAUGAAUAUAGAAGAAGGCAUUGAA-----U---GGCGUUCAGUGUUU---------------UGUUGCUGCAUUUGCAAA
..((((........))))..((((.(((((.(((((((((((-----(---...)))))))))))---------------).)).))).))))..... ( -17.90)
>DroSec_CAF1 274432 94 + 1
AAACAUUUGAAUUUAUGCAUAGGGCUUGUAAAAGCGCCUCCAUUCCAC--GGCCAACCGGAGUUUCCACUCGGUAGGGCG-ACUGGAGCAU-UGGAAA
..............((((..(((((((....)))).)))....(((((--(.((.((((.(((....))))))).)).))-..))))))))-...... ( -27.60)
>DroEre_CAF1 267247 94 + 1
AAACAUUUGAAUUUAUGCAUGGGACUUGUAAAAGCCCCUGCCUUCCAC--GGGCAUCUGGAGUUUCCACUCGGAAGGACG-GCUGGAGCAU-UGAAAA
...........((.((((..(((.(((....))))))(((((((((.(--((....)))((((....)))))))))).))-).....))))-.))... ( -26.90)
>DroYak_CAF1 283938 96 + 1
AAACAUUUGAAUUUAUGCAUAGGGCUUGUAAAAGCCCCUCCAUUCCACUCCGGCAACCGGAGUUUCCACUCGGAAGGGCG-GCUGGAGCAU-UGAAAA
...........((.((((...((((((....)))))).((((....(((((((...)))))))..((.(((....))).)-).))))))))-.))... ( -35.00)
>consensus
AAACAUUUGAAUUUAUGCAUAGGGCUUGUAAAAGCCCCUCCAUUCCAC__GGGCAACCGGAGUUUCCACUCGGAAGGGCG_GCUGGAGCAU_UGAAAA
..............((((...((((((....))))))...................((((....(((........)))....)))).))))....... (-10.02 = -10.88 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:39 2006