Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,058,646 – 18,058,749 |
Length | 103 |
Max. P | 0.756515 |
Location | 18,058,646 – 18,058,749 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.60 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -19.33 |
Energy contribution | -20.81 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.13 |
Mean z-score | -2.04 |
Structure conservation index | 0.66 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18058646 103 + 22407834 AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU ((((.(((....))).((((((((..((((((...(((((((....((((...)))).))))...)))......)))).))..))))))))....)))).... ( -34.30) >DroSec_CAF1 265734 103 + 1 AGCGGCUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUUAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU ((((((((......))))((((((..((((((...((((((((...((((...)))))))))...)))......)))).))..))))))......)))).... ( -34.70) >DroSim_CAF1 266019 103 + 1 AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCCUAAAAUGCGAAACUCUUACGAACAGGCUAAUAAAGGAGCGGACGCGUCGCAGAACUUUAAAU .....(((....))).((((((((..((((((..(((((.........................))))).....)))).))..))))))))............ ( -26.91) >DroEre_CAF1 258894 88 + 1 AG---------------CGAUGCGGUUGUCCUGCUGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUUGCCAAAUGUUAAAU .(---------------(((((((..((((((..((((((((....((((...)))).))))...)))).....)))).))..))))))))............ ( -28.40) >DroYak_CAF1 275248 103 + 1 AGCGGGUGGAAUAACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCACGACGUUAAAU ((((.((......)).((((((((..((((((...(((((((....((((...)))).))))...)))......)))).))..))))))))....)))).... ( -32.60) >DroAna_CAF1 251791 89 + 1 CGAG-------ACGAAGCCAUCCAUUUGUCCUGCAGCCUCGUAA-ACCUGAAAUGCAAAC------GCAAAUAAAGCAGCGGACGCGUUGCAAAACGUUAAAU ...(-------(((.........((((((..((((...(((...-...)))..))))...------))))))...((((((....))))))....)))).... ( -20.10) >consensus AGCGGGUGGCAUCACAGCGAUGCGGUUGUCCUGCAGCCUCGUAAAAUGCGAAACGCAAACGAAAAGGCAAAUAAAGGAGCGGACGCGUCGCAAAACGUUAAAU ................((((((((.(((((((...((((.......((((...)))).......))))......)))).))).))))))))............ (-19.33 = -20.81 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:36 2006