Locus 642

Sequence ID 2L_DroMel_CAF1
Location 1,939,141 – 1,939,232
Length 91
Max. P 0.560455
window1049

overview

Window 9

Location 1,939,141 – 1,939,232
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -37.25
Consensus MFE -20.86
Energy contribution -23.11
Covariance contribution 2.25
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.56
SVM decision value 0.05
SVM RNA-class probability 0.560455
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1939141 91 - 22407834
UUGCGGCUGGGAAUGCGAACGCAUUGCAGAU---GUGGACCCCGCUGCAGAUCCUCCGAACGGAACACCGGGUGGCGGAUGGAUCUGAUGCACG
..(((((.((((((((....)))))((....---))...))).)))))((((((((((..(((....))).....)))).))))))........ ( -36.70)
>DroSec_CAF1 103856 91 - 1
UUGCGGCUGGGAAUGCGAACGCAUUGAAGUU---GUGGACCCCGCAGCAGAUCCUCCGAACGGAACCCCGGGAGGCGGAUGGAUCUGAUGCACA
(..(((((...(((((....)))))..))))---)..).....(((.(((((((((((..(((....))).....)))).))))))).)))... ( -38.30)
>DroSim_CAF1 87777 91 - 1
UUGCGGCUGGGAAUGCGAACGCAUUGAAGUU---GUGGACCCCGCAGCAGAUCCUCCGAACGGAACCCCGGGAGGCGGAUGGAUCUGAUGCACA
(..(((((...(((((....)))))..))))---)..).....(((.(((((((((((..(((....))).....)))).))))))).)))... ( -38.30)
>DroEre_CAF1 106004 91 - 1
CUGCGGCUGGGAAUGCGAACGCAUUCCAGAU---GAGGAACCCGCUGCAGAUCCUCCAAAUGGUACACCUGGAGGCGGAUGGAUCUGAUGCACG
(((((((..(((((((....)))))))....---..((...)))))))))..((((((...((....))))))))((((....))))....... ( -34.80)
>DroYak_CAF1 114417 91 - 1
UUGCGGCUGGGAAUGCGAACGCAUUGCAGAC---GAGCAACCCGCCGCAGAUCCUCCAAAUGGAACCCCGGGAGGCGGAUGGAUCUGAUGCACG
.((((((.((((((((....)))))((....---..))..)))))).((((((((((....))).((((....)).))..)))))))..))).. ( -38.80)
>DroAna_CAF1 111034 84 - 1
-UGGUGCUGGGAGUUGUAGCGUACUCCCGUGGAGGAGGAUCC---------UCCUCCGAAUGGCACUCCUGGUGGCGGGUGAAUCUGAUGCACA
-.((((((((((((........)))))).((((((((....)---------)))))))...))))))....(((.((((....))))...))). ( -36.60)
>consensus
UUGCGGCUGGGAAUGCGAACGCAUUGCAGAU___GAGGACCCCGCAGCAGAUCCUCCGAACGGAACCCCGGGAGGCGGAUGGAUCUGAUGCACA
.((((((.((((((((....)))))..............))).))..(((((((((((..(((....))).....)))).))))))).)))).. (-20.86 = -23.11 +   2.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:43 2006