| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,037,321 – 18,037,416 |
| Length | 95 |
| Max. P | 0.785566 |
| Location | 18,037,321 – 18,037,416 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.87 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -18.48 |
| Energy contribution | -20.45 |
| Covariance contribution | 1.97 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785566 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18037321 95 + 22407834 GAGAGACAGGGC-UCAUCCCAUCCUUGGAG------------AUGGAGAUAGAGACAGUGAGCGAGUCCUCCGUCAUGGAUUCCUCACGUGCUUUUACUUCCAAGACU (((((((.(..(-((((((((((......)------------)))).))).))).).(((((.((((((........))))))))))))).)))))............ ( -32.20) >DroSec_CAF1 253609 95 + 1 GAGAGACAGGGC-UCAUCCCAUCCUUGGAG------------AUGGAGAGAGAGACAGUGAGCGAGUCCUCCGUCAAGGAUUCCUCACGUGCUUUUAGUUGCAAGACU (((((((.(..(-((.(((((((......)------------)))).)))))...).(((((.(((((((......)))))))))))))).)))))((((....)))) ( -32.40) >DroSim_CAF1 253615 95 + 1 GAGAGACAGGGC-UCAUCCCAUCCUUGGAG------------AUGGAGAGCGAGACAGUGAGCGAGUCCUCCGUCAAGGAUUCCUCACGUGCUUUUAGUUCCAAGACU ........(((.-....)))...(((((((------------...(((((((.....(((((.(((((((......)))))))))))).)))))))..)))))))... ( -37.60) >DroEre_CAF1 246534 100 + 1 -------AGGGC-UCAUCCCAUCCUUGGAGAUGCAGAUGGAGAUGGAGAGAGAGACAGUGAGCGAGUCCUCCGUCAAGGAUUCCUCACGUGCUUUCAGUGCCAAGACU -------..(((-((((((((((..((......))))))).)))))...(((((...(((((.(((((((......))))))))))))...)))))...)))...... ( -39.50) >DroYak_CAF1 263033 95 + 1 GAGAGACAGGGC-UCAUCCCAUCCUUGGAG------------AUGGAGAUAGAGACAGUGAGUGAGUCCACCGUCACGGAUUCCUCACGUGCCUUUAGUUCCAAGACU ..(..(((((((-.(((((((((......)------------)))).))).......(((((.((((((........)))))))))))).)))))..))..)...... ( -33.10) >DroAna_CAF1 239522 87 + 1 ---------GUCGUGUUCUCGUCCUCGUCG------------GGGAAAUGACUGGUUUAGAGUGAGUCCCCAGUCAAGGAUAUCUCACGUGUUCUCUGGUCCAAAGCU ---------(((((.((((((.......))------------)))).)))))(((.(((((((((((((........)))...)))))......))))).)))..... ( -23.30) >consensus GAGAGACAGGGC_UCAUCCCAUCCUUGGAG____________AUGGAGAGAGAGACAGUGAGCGAGUCCUCCGUCAAGGAUUCCUCACGUGCUUUUAGUUCCAAGACU ........(((......))).......................((((..(((((...(((((.((((((........)))))))))))...)))))...))))..... (-18.48 = -20.45 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:31 2006