Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,010,071 – 18,010,165 |
Length | 94 |
Max. P | 0.658988 |
Location | 18,010,071 – 18,010,165 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.65 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -21.49 |
Energy contribution | -22.22 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.20 |
Mean z-score | -1.83 |
Structure conservation index | 0.77 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658988 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18010071 94 + 22407834 GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAGGAACCCUUUCUUUCUUUA------- ........((((((...(((....)))...))))))..((((((((.(....).))))))))..(((((..((((((...))))))..))))).------- ( -29.40) >DroSec_CAF1 225902 94 + 1 GCGAACCAGUUUGGAAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAGGAACCCUUUCUUUCUUUA------- ........((((((...(((....)))...))))))..((((((((.(....).))))))))..(((((..((((((...))))))..))))).------- ( -29.40) >DroSim_CAF1 225611 94 + 1 GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUUUCGGCUGCCAAAGGGUUGGAAGGAACCCUUUCUUUCUUUA------- ...((((..((((((........(((((......))))).((((((((....)))))))))))))).))))((((((((....))))))))...------- ( -30.60) >DroEre_CAF1 218721 101 + 1 GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACUCUGCCGGUUGCCAAGGGGUUAAAAAGAACCCUUUCUUCCCUUAUAUAUUU ((.((.....)).))...........((((((.((((.(.(((....).))))))))))))).((((((((......))))))))................ ( -24.90) >DroYak_CAF1 235282 99 + 1 GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGUUGCCAAAGGGUUAAAAAGAACCUUUUCUUCCUUUAUGCAA-- (((.....((((((...(((....)))...))))))..((((((((.(....).)))))))).((((((((......)))))))).........)))..-- ( -25.70) >DroAna_CAF1 214267 95 + 1 GUCAACCAGUUUGGCAACAUAAUUAUGCAACGAUGCAUGCAGCUGGGGACU--UCCAGA-A-UAAAAGGGUCAAAAGAACCCUUUCUUUCAGCAACCAG-- (((..((((((((....))....((((((....)))))).)))))).))).--....((-(-..((((((((....).)))))))..))).........-- ( -27.50) >consensus GCGAACCAGUUUGGCAUCAUAAUUAUGCAACCAGGCAUGCAGCUGAGGACACUGUCGGCUGCCAAAGGGUUGAAAAGAACCCUUUCUUUCUUUA_______ ........((((((...(((....)))...))))))..((((((((........)))))))).((((((((......))))))))................ (-21.49 = -22.22 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:24 2006