Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,005,994 – 18,006,093 |
Length | 99 |
Max. P | 0.500000 |
Location | 18,005,994 – 18,006,093 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.34 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -17.39 |
Energy contribution | -20.27 |
Covariance contribution | 2.88 |
Combinations/Pair | 1.03 |
Mean z-score | -2.00 |
Structure conservation index | 0.59 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18005994 99 + 22407834 CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAU----------GUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCACUUGCUUUGUUUUUC-CGCGGAAUU .((((((((.....))))))))..(((((....----------..))))).((((....((((..............)))).))))...........(((-....))).. ( -23.34) >DroSec_CAF1 222017 109 + 1 CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGAGUGUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC-CGCGGAAUU .((((((((.....))))))))..(((((((((....))))))))).....(..(((..((((..............))))...)))..)(((((.....-.)))))... ( -35.24) >DroSim_CAF1 221096 109 + 1 CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGAGUGUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC-CGCGGAAUU .((((((((.....))))))))..(((((((((....))))))))).....(..(((..((((..............))))...)))..)(((((.....-.)))))... ( -35.24) >DroEre_CAF1 212546 102 + 1 ---AGGUGGUGAAUCCAGUUCCUCUAAAUUCAUGUGUGUGC--G---GUGUGUGAGCUGGCCAUUUCACUCUCAUUUCGACAACGCAUGCUUUGUUUUUCUCGCGGAAUU ---...(((.....)))(((((.(.((((.(((((((...(--(---(.(((.(((.(((.....)))))).))).)))...)))))))....)))).....).))))). ( -23.60) >consensus CUGAGGUGGUGAUUCCACUUCAUUUACAUUCAUAUAUGUGA__GUGUGUGUGUGAGCUGGCCAUUUCACUCUUAUUUUGGCAUCGCUUGCUCUGUUUUUC_CGCGGAAUU .((((((((.....))))))))...((((.(((((......))))).))))((((((..((((..............))))...))))))(((((.......)))))... (-17.39 = -20.27 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:23 2006