Locus 6407

Sequence ID 2L_DroMel_CAF1
Location 17,989,977 – 17,990,067
Length 90
Max. P 0.578144
window10224

overview

Window 4

Location 17,989,977 – 17,990,067
Length 90
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -30.10
Consensus MFE -22.52
Energy contribution -22.88
Covariance contribution 0.36
Combinations/Pair 1.23
Mean z-score -1.60
Structure conservation index 0.75
SVM decision value 0.09
SVM RNA-class probability 0.578144
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17989977 90 + 22407834
CACCGCCUCCUCCCCCCUGCCCGGGAUU-------UUCCCGAU-UCCCUGGUAAUUUGCAAGUGAUUUAUGGGGCCUCCUGCCUGGGGGGAAGCUGUA
.((.((....(((((((((((.((((..-------........-)))).))))..................((((.....))))))))))).)).)). ( -32.20)
>DroSec_CAF1 206167 88 + 1
CACCGCCUCCUCCUC-AUUCCCGGGAUU-------U-CCCGAU-UCCCUGGUAAUUUGCAAGUGAUUUAUGGGACCUCCUGCCAGGGGGGAAGCUGGA
..........(((..-.((((((((...-------.-)))...-.(((((((((((.......))))...(((....)))))))))))))))...))) ( -30.60)
>DroSim_CAF1 204734 89 + 1
CACCGCCUCCUCCUC-AUUCCCGGGAUU-------U-CCCGAUUUCCCUGGUAAUUUGCAAGUGAUUUAUGGGACCUCCUGCCUAGGGGGAAGCUGGA
..((((.(((((((.-.....(((((..-------(-(((((..((.((.((.....)).)).))..).)))))..)))))...))))))).)).)). ( -30.50)
>DroEre_CAF1 196622 85 + 1
CACCGCCUCCUCCU----UGCCGGGAUU-------UUCCCGAU-UCCCUGGUAAUUUGCAAGUGAUUUAUGGGACCUUCUGCUU-GGGGGAAGCUGGA
..((((.((((((.----.((((((...-------..))))..-((((....((((.......))))...))))......))..-)))))).)).)). ( -30.70)
>DroYak_CAF1 211899 92 + 1
CAACGCCACCUCCU----UCCUGGGAUUCCCCGAUUUCCCGAU-UCCCUGGUAAUUUGCAAGUGAUUUAUGGGACCUUCUGCAU-GGGGGAAGUUGGA
..........((((----....))))....((((((((((...-((((....((((.......))))...))))((........-)))))))))))). ( -26.50)
>consensus
CACCGCCUCCUCCUC__UUCCCGGGAUU_______UUCCCGAU_UCCCUGGUAAUUUGCAAGUGAUUUAUGGGACCUCCUGCCU_GGGGGAAGCUGGA
....((.(((((((.......(((((..........)))))...((((....((((.......))))...))))..........))))))).)).... (-22.52 = -22.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:14 2006