Locus 6406

Sequence ID 2L_DroMel_CAF1
Location 17,989,847 – 17,989,943
Length 96
Max. P 0.755212
window10223

overview

Window 3

Location 17,989,847 – 17,989,943
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 93.84
Mean single sequence MFE -25.38
Consensus MFE -22.88
Energy contribution -22.72
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -1.29
Structure conservation index 0.90
SVM decision value 0.49
SVM RNA-class probability 0.755212
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17989847 96 - 22407834
CAGCGCCUAUAAUAAGCAAG-UGAAUGCGAAUGUGCCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGCCGCUUCGUUGGUCGUAAAACAAGAAGGG
..(((((........(((..-....)))(((.(((.((((((.((((.(.......))))).)))))).))))))...)).)))............. ( -21.20)
>DroSec_CAF1 206037 96 - 1
CAGUGCCUAUAAUAAGCAAG-UGAAUGCGAAUGUGGCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGCUGCUUCGUUGGUCGUAAAACAAGAAGGG
.....(((............-.((..(((((.(..(((((((.((((.(.......))))).)))))))..))))))...))(.....)....))). ( -24.50)
>DroSim_CAF1 204604 96 - 1
CAGUGCCUAUAAUAAGCAAG-UGAAUGCGAAUGUGGCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGCCGCUUCGUUGGUCGUAAAACAAGAAGGG
.....(((............-.((..(((((.((((((((((.((((.(.......))))).)))))))))))))))...))(.....)....))). ( -27.30)
>DroEre_CAF1 196492 96 - 1
CAGUGCCUAUAAUAAGCAAG-UGAAUGCGAAUGUGGCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGCCGCUUCGUUGGUCGUAAAACAAGAAGGG
.....(((............-.((..(((((.((((((((((.((((.(.......))))).)))))))))))))))...))(.....)....))). ( -27.30)
>DroYak_CAF1 211769 96 - 1
CAGUGCCUAUAAUAAGCAAG-UGAAUGCGAAUGUGGCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGUCGCUUCGUUGGUCGUAAAACAAGAAGGG
.....(((............-.((..(((((.((((((((((.((((.(.......))))).)))))))))))))))...))(.....)....))). ( -24.60)
>DroAna_CAF1 196165 96 - 1
CGG-ACCUAUAAUAAGCAAGCCGAAUGCGAAUGUGGCUAUGGCUAUGACUGCGAAUGCACAAUUAUGGCCGGUUCGUUGCUCGUAAAACAGGGAAGG
(((-(((...........(((((.((....)).)))))..((((((((.(((....)))...))))))))))))))...(((........))).... ( -27.40)
>consensus
CAGUGCCUAUAAUAAGCAAG_UGAAUGCGAAUGUGGCUAUGAAUGUGACUGUGAAUGCACAAUUAUGGCCGCUUCGUUGGUCGUAAAACAAGAAGGG
.....(((.............(((..(((((.((((((((((.((((.(.......))))).)))))))))))))))...)))...........))) (-22.88 = -22.72 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:13 2006