Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,988,101 – 17,988,202 |
Length | 101 |
Max. P | 0.845265 |
Location | 17,988,101 – 17,988,202 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.86 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -15.08 |
Energy contribution | -14.33 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.29 |
Mean z-score | -2.10 |
Structure conservation index | 0.57 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17988101 101 + 22407834 UGUGGAGG-AAGGGAGCGCUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGUGCGAUAAAAUG-GUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACAUAA ((..((((-(.(((((((.......)))(((((.....))))).)))).....(((((((((...-.)))).)))))....)))))..))............. ( -25.00) >DroVir_CAF1 262562 97 + 1 GAAGGAA---GAGCAGCAUUUAUAACGCUUGUGUGGAUUAUAAAUCCCACCGGCACAAUAAACUG-CUUUAUUUGCAAAAGUUUUGUGCCUGAAAGGGCAC-- ......(---((((((..(((((...(((.(((.((((.....))))))).)))...))))))))-))))...............((((((....))))))-- ( -30.30) >DroEre_CAF1 194748 97 + 1 UGUGGAG-----GGAGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGUGCGAUAAAAUG-GUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACAUAA ((((.((-----(((((..((((..((((.(((.((((.....))))))).))))..))))....-((......))....))))))).))))........... ( -27.00) >DroYak_CAF1 210003 94 + 1 UGUGG---------AGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGCGCGAUAAAAUGGGUUUAUUUGCAAAAGUUCUCUGCAUAAAAAUACGUAA ((..(---------((.((((.....(((.(((.((((.....))))))).)))((((((((.....)))).))))..)))).)))..))............. ( -26.00) >DroMoj_CAF1 309349 97 + 1 UGUAGAG---GCGCAGCAUUUAUAACGCUUGUGUGGAUUAUAAAUCCCACUGGCACAAUAAACUG-CUUUAUUUGCAGAAGUUUUGUGCAUAAAAAGGCAC-- ((((((.---((...)).))))))..(((((((.((((.....)))))))..((((((....(((-(.......)))).....))))))......))))..-- ( -26.20) >DroAna_CAF1 194624 102 + 1 GCAAAAGGUGUGGGAGAACUUAUAACGCUUGUGUGGAUUACCAUUCCCAUGGGCACAAUAAACUG-CUUUAUUUGCGAAAGUUCUGUGCAUGAAAGGACUACA (((((.(.((((((....)))))).)(((..((.(((.......)))))..)))...........-.....)))))...((((((.........))))))... ( -24.50) >consensus UGUGGAG_____GGAGCACUUAUAACGCUUGUGUGGAUUACAAAUCCCACCGGCACAAUAAAAUG_CUUUAUUUGCAAAAGUUCUCUGCAUAAAAAGACAUAA ............((((.((((.....(((.(((.((((.....))))))).)))..((((((.....)))))).....)))).))))................ (-15.08 = -14.33 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:12 2006