Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,981,568 – 17,981,681 |
Length | 113 |
Max. P | 0.927316 |
Location | 17,981,568 – 17,981,681 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 94.64 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -28.26 |
Energy contribution | -28.02 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.19 |
Mean z-score | -1.53 |
Structure conservation index | 0.88 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17981568 113 - 22407834 UUCACUUUCCUGCCGAAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UACAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ..........(((((..((((.....(((((....)).(((...(((.(((((((((....)))))...))-)).)))....)))...))).))))..)))))........... ( -31.40) >DroSec_CAF1 197536 113 - 1 UUCACUUUCCUGCCGAAGAUAGUAUAGCCAGAAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ..........(((((..((((.....(((.((....))(((...........(((((....)))))((...-.)).......)))...))).))))..)))))........... ( -29.10) >DroSim_CAF1 196076 113 - 1 UUCGCUUUCCUGCCGGAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA-UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ...(((.((.(((((..(((((((((((.(((........))).))))))..(((((....)))))((...-.)).....)))))..)))))....)).)))............ ( -34.60) >DroEre_CAF1 187753 114 - 1 UUCACUUUCCUGCCGAAGGCUGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCCAGCGGAGGAAGCUCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ..........((((((.((((....))))((....)).(((...........(((((....)))))(((.((....)).)))))).))))))...................... ( -31.70) >DroYak_CAF1 200279 114 - 1 UUCACUUUCCUGCCGAAGGUGGUAGAACCAGGAAACUCGACUUAGUUCUAUUUCCGCUUGAGCGGAGGAAGCUCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ..........((((((.((..(((((((.(((........))).)))))))..))(((.((((.......)))).)))........))))))...................... ( -32.90) >consensus UUCACUUUCCUGCCGAAGAUAGUAGAGCCAGGAAACUCGACUUAGUUCUAUUUCCGCUCGAGCGGAGGAAA_UCCAGCAUCUGUCAUCGGCAUAUCGACGGCAUUAAUUAAUCA ..........((((((.(((((((((((.(((........))).))))))(((((((....)))))))............))))).))))))...................... (-28.26 = -28.02 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:09 2006