| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,972,932 – 17,973,052 |
| Length | 120 |
| Max. P | 0.708663 |
| Location | 17,972,932 – 17,973,052 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -52.97 |
| Consensus MFE | -24.55 |
| Energy contribution | -23.97 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17972932 120 - 22407834 AGCCAGGUGUUGGCCACAGCCAGAGCCCUUCACUUCACCCGUCAAGCGGAGCAGGCCAUUGGAAGCAUGUCCUUGGGAAAACUAAAGCAGCAGUUAAAGGACGAAAUCACCCACCUCGCU (((.(((((.(((((...((....))............(((.....)))....))))).........(((((((.....((((........)))).)))))))........))))).))) ( -31.60) >DroVir_CAF1 245651 120 - 1 AGCCAGGUGCUGGCCACAGCGCGUGCCCUACACUUUACGCGUCAGACGGAAAAGGCCAUUGGGGGCAUGUCGCUGGCCAAGUUGCAGCAGCAGCUCAAAGCAGAAAUAGCUCAUCUGGCG .((((((((.((((((..(((((((((((...((((.(.((.....))).)))).......)))))))).)))))))))((((((....))))))...((((....).))))))))))). ( -52.70) >DroPse_CAF1 278667 120 - 1 AGCCAGGUGCUGGCCACGGCCCGGGCUCUGCACUUCACCCGCCAGGCGGAGCAGGCGAUUGGCGCAAUGGCGCUGGCGAAGCUCCAGCAGCAGCUGAAGGCGGAAAUUGCCCAUCUGGCG .(((((((...(((....))).(((((((((.(((((.(.((...(((((((...((.(..((((....))))..)))..))))).)).)).).))))))))))....))))))))))). ( -62.50) >DroMoj_CAF1 291627 120 - 1 AGCCAGGUGCUGGCAACGGCGCGUGCCCUUCACUUCACGCGUCAGACGGAGAAGGCCAUCGGCAGCAUGGCGUUGGCCAAGCUGCUGCAGCAGCUCAAGGCCGAGAUGUCGCACCUGGCG .(((((((((.(....)((((((((..........)))))))).((((.....((((...((((((.((((....)))).))))))((....))....))))....))))))))))))). ( -65.40) >DroAna_CAF1 179635 120 - 1 AGCCAGGUCCUGGCCACGGCCAGAGCUCUUCACUUCACCCGCCAGACAGAGCAGGCAAUCGGGGGCAUGUCCCUGGCCAAGCUGCGACAACAAUUAAAGGACGAAAUCAACCACCUGGCC .(((((((.(((((....))))).(((((((.............)).))))).(((...((((((....)))))))))....................((..(....)..))))))))). ( -41.62) >DroPer_CAF1 280070 120 - 1 AGCCAGGUGCUGGCCACGGCCCGGGCUCUGCACUUCACCCGCCAGGCGGAGCAGGCGAUUGGCGCCAUGGCGCUGGCGAAGCUCCAGCAGCAGCUGAAGGCGGAAAUUGCCCAUCUGGCG .(((((((...(((....))).(((((((((.(((((.(.((...(((((((...((.(..((((....))))..)))..))))).)).)).).))))))))))....))))))))))). ( -64.00) >consensus AGCCAGGUGCUGGCCACGGCCCGAGCCCUUCACUUCACCCGCCAGACGGAGCAGGCCAUUGGCGGCAUGGCGCUGGCCAAGCUGCAGCAGCAGCUAAAGGCCGAAAUCGCCCACCUGGCG .(((((((((((....))))....(((.............(((..........)))....(((((....))))))))...(((..(((....)))...)))...........))))))). (-24.55 = -23.97 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:05 2006