Locus 6400

Sequence ID 2L_DroMel_CAF1
Location 17,968,286 – 17,968,406
Length 120
Max. P 0.784479
window10214

overview

Window 4

Location 17,968,286 – 17,968,406
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -32.04
Consensus MFE -18.74
Energy contribution -17.63
Covariance contribution -1.10
Combinations/Pair 1.50
Mean z-score -2.29
Structure conservation index 0.58
SVM decision value 0.57
SVM RNA-class probability 0.784479
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17968286 120 - 22407834
GUGACAAGCAAGCCCUUCUUUCGAUCCUUUCGGAUCUUAUCCCUUAGCUUUUCCAGCUGCCUGAAGGCCUCGUUGGCCCUACGAGCCUUUUUCCUAUCCCUGUCACGUUCCUGCUCCAGC
(((((((((.((.(((((....(((((....)))))........(((((.....)))))...))))).)).)))(((.......))).............)))))).............. ( -30.80)
>DroVir_CAF1 241137 120 - 1
GUCACCAGGAGACCCUUCUUACGCUCCUUGCGUAUCUUAUCACGUAGCUUUUCCAGCUGCCGGAACGCCUCGUUGGCGCGUCUCGCCUUCUUUCGAUCACGAUCACGCUCCUGCUCCAAA
.......((((........(((((.....))))).........((((((.....)))))).(((..(((.....)))((((.(((...((....))...)))..)))))))..))))... ( -33.90)
>DroGri_CAF1 254080 120 - 1
GUCACCAGGAGUCCCUUCUUGCGCUCCUUGCGUAUCUUAUCGCGCAGCUUCUCCAGCUGCCUGAAUGCCUCAUUCGCACGUCGCGCCUUCUUCCGAUCCCGAUCGCGUUCCUGCUCCAAA
.......(((((........((((..(.(((............((((((.....))))))..(((((...)))))))).)..)))).......((((....)))).......)))))... ( -32.40)
>DroEre_CAF1 173607 120 - 1
GUGACAAGCAAGCCCUUCUUUCGAUCCUUUCGGAUCUUAUCCCUUAGCUUUUCCAGCUGCCUGAAGGCCUCGUUGGCUCUACGCGCCUUCUUUCUAUCCCUGUCACGUUCCUGUUCCAGC
(((((((((.((.(((((....(((((....)))))........(((((.....)))))...))))).)).)))(((.......))).............)))))).............. ( -31.20)
>DroWil_CAF1 235056 120 - 1
GUUACCAAGAGACCCUUUUUCCGCUCUUUGCGUAUUUUGUCACGUAACUUUUCCAAUUGCCGGAAGGCCUCAUUCGCUCUUCUGGCCUUUUUACGAUCACGAUCACGUUCUUGCUCUAAU
.....((((((((........(((.....)))......)))((((.............((((((((((.......)).))))))))........(((....))))))))))))....... ( -26.94)
>DroMoj_CAF1 286387 120 - 1
GUCACCAGGAGACCCUUCUUGCGCUCCUUGCGUAUCUUAUCACGUAGCUUCUCCAGCUGCCGGAACGCCUCAUUGGCGCGUCGCGCCUUCUUUCUAUCACGAUCGCGCUCCUGCUCCAGC
.....((((((((((....(((((.....))))).........((((((.....)))))).))..((((.....)))).)))((((..((..........))..)))))))))....... ( -37.00)
>consensus
GUCACCAGGAGACCCUUCUUGCGCUCCUUGCGUAUCUUAUCACGUAGCUUUUCCAGCUGCCGGAAGGCCUCAUUGGCGCGUCGCGCCUUCUUUCGAUCACGAUCACGUUCCUGCUCCAAC
.....((((((....(((.(((((.....))))).........((((((.....))))))..)))((((.....)))).............................))))))....... (-18.74 = -17.63 +  -1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:04 2006