| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,963,373 – 17,963,493 |
| Length | 120 |
| Max. P | 0.685592 |
| Location | 17,963,373 – 17,963,493 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.00 |
| Mean single sequence MFE | -46.88 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.57 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17963373 120 - 22407834 GAGUCAAGCAGUUGUCGGCCAAAUUGCAGACGUACACACAAGAAGCAGCAGUUCUGGAGCUGAAACUCCAAGAGGCAAGUGGAACCUUGCAGGCUGCAGAGCUGUUGGUGGAAAAACUUA ..(((..((((((........)))))).))).....(((......(((((((((((.((((....(((...)))(((((......))))).)))).)))))))))))))).......... ( -40.00) >DroVir_CAF1 234883 120 - 1 GUGUCCAGAAGUUAUCCGCAAAGCUGCAAACCUACACGCAAGAGGCGGCCGUGCUUGAGCUAAAGCUGCAGGAGGCAGGUGCCACACUGCAGGCCGCCGAGCUGCUGGUGGGCAAACUAA .((((((..(((..((.(((....))).........(....).(((((((..((((......))))((((((.(((....))).).))))))))))))))...)))..))))))...... ( -49.80) >DroGri_CAF1 247269 120 - 1 GGGUCCAGCAGCUGUCGGCCAAGUUGCAGACAUACACGCAAGAGGCAGCCGUGCUGGAACUGAAGCUACAAGAGGCGGGCGCCACGCUUCAAGCAGCCGAGCUCCUCGUGGGCAAACUGA ..(((((((((((........))))))..............((((.(((((.((((....((((((.....(.(((....))).)))))))..)))))).))))))).)))))....... ( -44.10) >DroWil_CAF1 228995 120 - 1 GAGUUAAACAAUUAUCGGCCAAAUUGCAAACCUAUACCCAGGAGGCAGCUGUCCUGGAAUUGAAAUUGCAGGAGGCAAGUAAUAACUUGCAGGCAGCUGAACUUUUGGUGGGCAAACUAA .((((...(((((........)))))....((((...(((((((.(((((((((((.(((....))).))))..((((((....))))))..)))))))..)))))))))))..)))).. ( -37.70) >DroMoj_CAF1 280755 120 - 1 GCGUGCAGAAGCUGUCUGCGAAGUUGCAAACCUACACGCAGGAGGCGGCCGUGCUGGAGCUGAAGCUGCAAGAGGCGGGCGCCACGCUGCAGGCAGCGGAGCUGUUGGUGGGCAAGCUGA ((.((((((.....))))))...((((..(((.(((.((....((((.((((.(((.(((....))).).))..)))).)))).(((((....)))))..))))).)))..))))))... ( -54.40) >DroAna_CAF1 170997 120 - 1 GAGUAAAGCAGCUGUCCGCCAAACUGCAGACCUACACUCAGGAGGCGGCAGUCCUGGAGCUGAAGCUCCAAGAGGCCAGCGGCAAUCUGCAGGCAGCAGAGCUGUUGGUGGGAAAGCUGA ........(((((.(((((((..((((((((((......)))..(((((..((.((((((....)))))).)).))).)).....)))))))(((((...))))))))))))..))))). ( -55.30) >consensus GAGUCAAGCAGCUGUCGGCCAAAUUGCAAACCUACACGCAAGAGGCAGCCGUGCUGGAGCUGAAGCUGCAAGAGGCAAGCGCCACCCUGCAGGCAGCAGAGCUGUUGGUGGGCAAACUGA .......((((((........))))))...(((((.(....).((((((.....((.(((....))).)).(..((..(((......)))..))..)...)))))).)))))........ (-16.42 = -16.57 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:03 2006