| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,963,097 – 17,963,200 |
| Length | 103 |
| Max. P | 0.552237 |
| Location | 17,963,097 – 17,963,200 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.15 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -16.46 |
| Energy contribution | -18.13 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552237 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17963097 103 - 22407834 U-AUUAUGUUCU------CUUACUCACAGCUCCUCCCUCAAACGUCUGGCGGCAGAUUUUCAUUUACCCUCCGAUUUCGAUCUCCGGGGAUCACUGCUCACGGAGCAGCA .-..........------..........(((.((((......((.....))((((.................(....)(((((....))))).))))....)))).))). ( -21.80) >DroSec_CAF1 179118 103 - 1 U-AUUAUGUUCU------CCUACUCACAGCUCCUCCCUCAAACGUCUGGCGGCAGAUUUUCACUUGCCCUCAGACUUCGAUCUCCGGGGAUCACUGCUCACGGAGCAGCA .-..........------..........(((.((((.......((((((.(((((........))))).))))))...(((((....))))).........)))).))). ( -31.70) >DroSim_CAF1 175204 103 - 1 U-AUUAUGUUCU------CCUACUCACAGCUCCUCCCUCAAACGUCUGGCGGCAGAUUUUCACUUGCCCUCCGACUUCGAUCUCCGGGGAUCACUGCUCACGGAGCAGCA .-..........------..........(((.((((.......(((.((.(((((........))))).)).)))...(((((....))))).........)))).))). ( -27.10) >DroEre_CAF1 168495 109 - 1 U-GUUAUGUUCUUACAUGCUUACUCGCAGCUCCUCCCUCAAACGUCUGGCGGCAGAUUUUCAUUUGCCCUCCGACUUCGACCUCCGGGCAUCACUGCUCACGGAGCAGCA .-..(((((....))))).......((.(((((..........(((.((.(((((((....))))))).)).)))..........(((((....)))))..))))).)). ( -32.40) >DroYak_CAF1 182317 100 - 1 U-GUUAUAUGCU------CUUACUCACAGUUCAUCCCUCAAACGUCUGGCGGCAGAUUUUCAUUUGCC---CGACUUCGACCUCCAGAGAUCACUGCUCACGGAGCAGCA .-......((((------((......((((..(((.........(((((.(((((((....)))))))---((....))....)))))))).)))).....))))))... ( -23.60) >DroPer_CAF1 270601 101 - 1 UCAUUGAAAUCC------C---UCCAUAGUUCCUCCCUAAAACGUCUGGCUGUGGACUUUCACCUUCCUGCCGACUUUGAUCUUCGCCAGACGCUGCUCACCGAACAGCA ............------.---.....................(((((((...(((...(((...((.....))...))))))..)))))))((((.((...)).)))). ( -19.50) >consensus U_AUUAUGUUCU______CUUACUCACAGCUCCUCCCUCAAACGUCUGGCGGCAGAUUUUCACUUGCCCUCCGACUUCGAUCUCCGGGGAUCACUGCUCACGGAGCAGCA ............................(((.((((.......(((.((.(((((........))))).)).)))...(((((....))))).........)))).))). (-16.46 = -18.13 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:02 2006