Locus 6397

Sequence ID 2L_DroMel_CAF1
Location 17,962,463 – 17,962,583
Length 120
Max. P 0.968172
window10211

overview

Window 1

Location 17,962,463 – 17,962,583
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.39
Mean single sequence MFE -38.77
Consensus MFE -21.97
Energy contribution -22.06
Covariance contribution 0.09
Combinations/Pair 1.46
Mean z-score -2.64
Structure conservation index 0.57
SVM decision value 1.62
SVM RNA-class probability 0.968172
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17962463 120 + 22407834
AAUGUCGCCCUCUGAUUUCGAUAGUUGCUCCAGUAGUUUAUCUUGCAUUUCCAUUCGCUGCUUCAGAAGAUGUCCUUCUUUUUGUAGCAACUCUAUCCUUUGCUGCUCCAACUCGCCAUU
..(((((...........)))))((((...(((((((.......))..........(((((...(((((.....)))))....)))))............)))))...))))........ ( -20.90)
>DroVir_CAF1 233558 120 + 1
UAUAUCGCCCUCAGCCUUGGAUAGUUGCUCCAACAGUUUGUCCUGCAGUGCCAUGCGCUGCUUGAUCAGCUCACCCUCGCGCUGCAAUAGCUCAAUGCGUUGCUGCUCCAAUGCGGGAUU
.......(((...((.(((((.....((......((((.(((..(((((((...)))))))..))).)))).......))((.(((((.((.....))))))).))))))).)))))... ( -38.12)
>DroPse_CAF1 268564 120 + 1
AAUGUCGCCCUCCGACUUGGAGAGCUGUUCCAGCAGCUUGUCCUGCAUUUCCAUGCGCUGCUUGAGCAGAUCUCCCUCGCGCUGCAGCAGCUGGAUCCUCUGCUGCUCCAGCUCCGCAUU
...((((.....))))..(((((.((((((.((((((.......((((....)))))))))).)))))).)))))...((((((.((((((.((.....)))))))).))))...))... ( -49.41)
>DroGri_CAF1 246080 120 + 1
UAUGUCUCCCUCGGCUUUGGACAGCUGCUCGAGCAGUUUAUCCUGCAACGCCAUACGCUGCUUGAGCAGCUCACCCUCGCGUUGGAGCACCUCAAUUCUCUGCUCCUCCAGCUUGGCAUU
.(((((.......((...((..(((((((((((((((.(((...((...)).))).)))))))))))))))...))..))(..((((((...........))))))..).....))))). ( -43.70)
>DroAna_CAF1 170100 120 + 1
GAUGUCUCCCUCUGACUUCGACAGUUGCUCCAGGAGCUUGUCUUGCAUCUCCGUCCGCUGCUUCAGCAGAUCCCCCUCCUUCUGGAGCAGUUGAAUUCUUUGCUGCUCCAGCUCUGCAUU
((.(((.......))).))((.(((.((....((((..((.....)).))))....)).))))).(((((...........((((((((((.((....)).)))))))))).)))))... ( -37.40)
>DroPer_CAF1 269967 120 + 1
AAUGUCGCCCUCCGACUUGGAGAGCUGUUCCAGCAGCUUGUCCUGCAUCUCCAUGCGCUGCUUGAGAAGAUCUCCCUCGCGCUGCAGCAGCUGGAUCCUCUGCUGCUCCAGCUCCGCAUU
...((((.....))))..(((((.((.(((.((((((.......((((....)))))))))).))).)).)))))...((((((.((((((.((.....)))))))).))))...))... ( -43.11)
>consensus
AAUGUCGCCCUCCGACUUGGACAGCUGCUCCAGCAGCUUGUCCUGCAUCUCCAUGCGCUGCUUGAGCAGAUCUCCCUCGCGCUGCAGCAGCUCAAUCCUCUGCUGCUCCAGCUCGGCAUU
.............((.(((((...((((((.((((((...................)))))).))))))..............(((((((.........)))))))))))).))...... (-21.97 = -22.06 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:00 2006