Locus 6395

Sequence ID 2L_DroMel_CAF1
Location 17,957,040 – 17,957,139
Length 99
Max. P 0.542303
window10209

overview

Window 9

Location 17,957,040 – 17,957,139
Length 99
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 83.04
Mean single sequence MFE -29.45
Consensus MFE -17.60
Energy contribution -18.29
Covariance contribution 0.70
Combinations/Pair 1.16
Mean z-score -2.30
Structure conservation index 0.60
SVM decision value 0.02
SVM RNA-class probability 0.542303
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17957040 99 + 22407834
GCCAAAGUCAAAGAAG-------ACUCACUGACAAAGGGCAAA------GCCCAGCUGCAAAGUCAAAA------GUGCGGCAUGAGUGCAAACUGAUUAAUCACAUUUGGUGGGCUU
(((...((((..((..-------..))..))))....))).((------(((((((((((.........------.))))))((.(((....))).)).............))))))) ( -29.30)
>DroSec_CAF1 172997 99 + 1
GCCAAAGUCAAAGAAG-------ACUCUCUGACAAAGGGCAAA------GCCCAGCUGCAAUGUCAAAA------GUGCGGCAUGAGUGCAAACUGAUUAAUCACAUUUGGUGGGCUU
(((...((((.(((..-------..))).))))....))).((------(((((((((((.(......)------.))))))((.(((....))).)).............))))))) ( -32.10)
>DroSim_CAF1 169114 99 + 1
GCCAAAGUCAAAGAAG-------ACUCUCUGACAAAGGGCAAA------GCCCAGCUGCAAAGUCAAAA------GUGCGGCAUGAGUGCAAGCUGAUUAAUCACAUUUGGUGGGCUU
(((...((((.(((..-------..))).))))....))).((------(((((((((((.........------.))))))((.(((....))).)).............))))))) ( -31.30)
>DroEre_CAF1 162521 105 + 1
GCCAAAGUCAAAGACG-------ACCCUUUGACAAAGGCCAAGUCCAAAGCCCAGCUGCAAAGUCAAAA------GUGCGGCCUGAGUGCAAACUGAUUAAUCACAUUUGGUGGGCUU
(((...(((((((...-------...)))))))...)))........(((((((((((((.........------.))))))(..((((.....(((....)))))))..)))))))) ( -33.40)
>DroYak_CAF1 176169 99 + 1
GCCAAAGUCAAAGACG-------ACUCUUUGACAAAGGCCGAG------GCCCAGCUGCAAAGUCAAAA------GUCCGGCAUGAGUGCAAACUGAUUAAUCACAUUUAGUGGGCUU
(((...((((((((..-------..))))))))...)))..((------((((...((((..(((....------....))).....)))).(((((..........))))))))))) ( -29.10)
>DroPer_CAF1 252477 112 + 1
GUCAAAGUCAAAGUAAAAGCCAAAGCCAAUGACAAAGGCCAAA------GCCCGGUCACAAAGUCAGAAGUCGAAGUCCCGCAUUAGCAAAAGCUGAUUAAUCACAUUUGAAGGGCAU
........................(((..((((...(((....------)))..))))............(((((((.....((((((....)))))).....)).)))))..))).. ( -21.50)
>consensus
GCCAAAGUCAAAGAAG_______ACUCUCUGACAAAGGCCAAA______GCCCAGCUGCAAAGUCAAAA______GUGCGGCAUGAGUGCAAACUGAUUAAUCACAUUUGGUGGGCUU
(((...((((.((.............)).))))...)).).........(((((((((((................))))))((.(((....))).)).............))))).. (-17.60 = -18.29 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:58 2006