Locus 6394

Sequence ID 2L_DroMel_CAF1
Location 17,954,937 – 17,955,028
Length 91
Max. P 0.997901
window10208

overview

Window 8

Location 17,954,937 – 17,955,028
Length 91
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 92.84
Mean single sequence MFE -18.72
Consensus MFE -16.08
Energy contribution -16.28
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.40
Structure conservation index 0.86
SVM decision value 2.96
SVM RNA-class probability 0.997901
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17954937 91 + 22407834
ACUUUCAAGAUUCACAACUGCAACACUUGAAGUGUGUUGAAAGUGCACGCACACUCGCCUAAUCCCGCUCACAGAUACUCCACA-------CACACAA
...((((((................))))))((((((.((..(((....)))....((........))..........)).)))-------))).... ( -15.99)
>DroSec_CAF1 170874 91 + 1
ACUUUCAAGAUUCACAACUGCAACACUUGCAGUGUGUUGAAAGUGCACGCACACUGGCCUAAUCCCGCUCACAGAUACUCCACA-------CAGACAA
((((((((....((((.(((((.....))))))))))))))))).........(((((........))...)))..........-------....... ( -18.10)
>DroSim_CAF1 166958 91 + 1
ACUUUCAAGAUUCACAACUGCAACACUUGCAGUGUGUUGAAAGUGCACGCACACUCGCCUAAUCCCGCUCACAGAUACUCCACA-------CAGGCAA
((((((((....((((.(((((.....)))))))))))))))))............((((........................-------.)))).. ( -20.41)
>DroEre_CAF1 160474 95 + 1
ACUUUCAAGAUUCACAACUGCAACACUUGCAGUGUGUUGAAAGUGCACGCACACUCGCCUAAUCCCGCACACAGAUACUGCACAC---ACACGCACAA
..((((((....((((.(((((.....)))))))))))))))((((..((......))........(((.........)))....---....)))).. ( -21.60)
>DroYak_CAF1 174146 98 + 1
ACUUUCAAGAUUCACAACUGCAACACUUGCAGUGUGUUGAAAGUGCACGCACACUCGCCUAAUCCCGCACACAGAUACUCCACACCCCACACACACAA
((((((((....((((.(((((.....)))))))))))))))))............((........)).............................. ( -17.50)
>consensus
ACUUUCAAGAUUCACAACUGCAACACUUGCAGUGUGUUGAAAGUGCACGCACACUCGCCUAAUCCCGCUCACAGAUACUCCACA_______CACACAA
((((((((....((((.(((((.....)))))))))))))))))....((......))........................................ (-16.08 = -16.28 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:57 2006