| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 17,933,621 – 17,933,727 |
| Length | 106 |
| Max. P | 0.849217 |
| Location | 17,933,621 – 17,933,727 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -18.57 |
| Energy contribution | -19.74 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849217 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17933621 106 + 22407834 --AUAUAUUUGUACGGUUCCAGUUGUACACA--------CG---ACACAUGUUGUGCACGCGAACUGUAUCCUUUGUGCGACUGCCACAUUUUUUAUACUUUGUCGCACUUUUUGAGGC --........(((((((((..((.(((((.(--------((---.....))))))))))..)))))))))((((.(((((((....................))))))).....)))). ( -28.75) >DroSec_CAF1 150918 108 + 1 --AUAUAUUUGUACGGUUCCAGUUGUACACA--------CG-GCACACAUGUUGUGCACCCGAACUGUAUCCUUUGUGCGACUGCCACAUUUUUUAUACUUUGUCGCACUUUUUGAGGC --........(((((((((..((.(((((((--------.(-.....).)).)))))))..)))))))))((((.(((((((....................))))))).....)))). ( -30.15) >DroSim_CAF1 142336 108 + 1 --AUAUAUUUGUACGGUUCCAGUUGUACACA--------CG-GCACACAUGUUGUGCACCCGAACUGUAUCCUUUGUGCGACUGCCACAUUUUUUAUACUUUGUCGCACUUUUUGAGGC --........(((((((((..((.(((((((--------.(-.....).)).)))))))..)))))))))((((.(((((((....................))))))).....)))). ( -30.15) >DroEre_CAF1 141063 107 + 1 AUAUAAAUUUGUACGGUUCCAGUUGUACACA--------CG-GC--ACAUGUUGUGCACCCCAGCUGUAUCCUUUGUGCGGCUGCCACAUUU-UUAUACUUUGUCGCACUUUUUGAGGC ..........((((((((...(.((((((.(--------((-..--...))))))))).)..))))))))((((.(((((((..........-.........))))))).....)))). ( -25.91) >DroYak_CAF1 148909 103 + 1 UU-----UUUUUACGCUUCCAGUUGUACACA--------CG-GC--ACAUGUUGUGCACCCGAAGUGUAUCCUUUGUGCGGCAGCCACAUUUUUUAUACUUUGUCGCACUUUUUGAGGC ..-----....((((((((..((.(((((.(--------((-..--...))))))))))..)))))))).((((.(((((((((................))))))))).....)))). ( -29.89) >DroAna_CAF1 144134 113 + 1 AUUUGUGUUUUUUCG----CAGCUUUCUACAUAUAUGUAUGUGU--GUAUGUCUGGCACUCGAACUGUGUCCUUUGCCAGGCAGUCGCACUUUUUGUACUUUGUGGCAAUUUUUGAGGC ...((((......))----))((((((((((..((((...((((--(..(((((((((...((......))...)))))))))..)))))....))))...)))))........))))) ( -30.00) >consensus __AUAUAUUUGUACGGUUCCAGUUGUACACA________CG_GC__ACAUGUUGUGCACCCGAACUGUAUCCUUUGUGCGACUGCCACAUUUUUUAUACUUUGUCGCACUUUUUGAGGC ...........((((((((..(.((((((((..................))).))))))..)))))))).((((.(((((((....................))))))).....)))). (-18.57 = -19.74 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:53 2006