Locus 6390

Sequence ID 2L_DroMel_CAF1
Location 17,926,634 – 17,926,728
Length 94
Max. P 0.666318
window10203

overview

Window 3

Location 17,926,634 – 17,926,728
Length 94
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 95.71
Mean single sequence MFE -32.24
Consensus MFE -25.56
Energy contribution -26.16
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.28
SVM RNA-class probability 0.666318
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 17926634 94 + 22407834
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCCUGAUGAACUCUUCGCCAGCAGCUCUUUGACCUGGGCCAACGCGUCGUAUACUCAAUG----CU
..((((.....((((((((.((((((((((((((.....))))).))))))....((((........))))....)))))))...)))))))----). ( -32.70)
>DroSec_CAF1 144000 98 + 1
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCGUGAUGAACUCUUCACCAGGGGCUCUUUGACCUGGACCAACGCGUCGUAUACUCAAUGUAUACU
............((.(((((((((((....).)))))))..........(((((..(.....).))))).....))).))((((((.....)))))). ( -33.00)
>DroSim_CAF1 121818 94 + 1
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCCUGAUGAACUCUUCACCAGGGGCUCUUUGACCUGGACCAACGCGUCGUAUACUCAAUG----CU
..((((....((((.((((((..((((((((((((((.(((.....))).)))))))).)))).))..))))...)).)))).......)))----). ( -30.70)
>DroEre_CAF1 134097 94 + 1
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCCUGAUGAACUCUUCACCAGGGGCUCUUUGACCUGGGCCAACGCGUCGUAUACUCAAUG----CU
..((((.....((((((((.((((((....)).((((.(((.....))).))))(((((........)))))..))))))))...)))))))----). ( -33.30)
>DroYak_CAF1 141910 94 + 1
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCCUGAUGAACUCUUCACCAGAGGCUCUUUGACCUGGGCCAACGCGUCGUAUACUCAAUG----CU
..((((.....((((((((.(((((.((((((((.....))))).))).))...(((((........)))))...)))))))...)))))))----). ( -31.50)
>consensus
AUGCAUCACAAUGAGGCGGUCGCGGCGAAAGUUCCUGAUGAACUCUUCACCAGGGGCUCUUUGACCUGGGCCAACGCGUCGUAUACUCAAUG____CU
........((.((((((((.(((((.((((((((.....))))).))).))...(((((........)))))...)))))))...)))).))...... (-25.56 = -26.16 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:52 2006