Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 17,922,662 – 17,922,766 |
Length | 104 |
Max. P | 0.916045 |
Location | 17,922,662 – 17,922,766 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 68.59 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -11.78 |
Energy contribution | -13.38 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.25 |
Mean z-score | -1.42 |
Structure conservation index | 0.59 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17922662 104 + 22407834 ---AUAUUACUAUUUCAAUUUUAAGACGCAAUAUUGCCCAACUUUGUUGGUAACAUGAAAGUGAAUGUGCAGUGUGAGAGACUGCACUUCACUUUUCU-UUCAUCUAA ---....................(((.(((....)))(((((...)))))......(((((((((.(((((((.(....)))))))))))))))))..-....))).. ( -25.50) >DroSec_CAF1 140118 104 + 1 ---AUAUUACUAUUACAACUUAAAGAUUCUAUAUUGCCCAGCU-UGUUGGUAACAUGAAAUUGAAUGUGCAGUGUGAGAGACUGCACUUCACUUUUCACUUAAUCUAA ---....................(((((.........((((..-..)))).....(((((.((((.(((((((.(....))))))))))))..)))))...))))).. ( -21.80) >DroSim_CAF1 117839 104 + 1 ---AUAUUACUAUUACAAUUUAAAGACGCAAUAUAGCCCAGCU-UAUUGGUUACAUGAAUGUGAAUGUGCAGUGUGAGAGACUGCACUUCACUUUUCACUUAACCUAA ---...................(((..((......))....))-)...(((((..((((.(((((.(((((((.(....)))))))))))))..))))..)))))... ( -26.40) >DroEre_CAF1 130238 81 + 1 ---GUAUAACUAUUAGAAUUUG---------------CUUGCU-UGUUGUUAACACAAAAUAGAACGUGCAGUGGGAGAGACUGCACUUCAAUG-------UAUAU-A ---(((((..............---------------......-..((((....))))....(((.(((((((.......))))))))))..))-------)))..-. ( -13.90) >DroYak_CAF1 137950 88 + 1 CUCGUAUUACUAUUAGAAUUUG---------------UUUGCU-UGUUGUUAACAUAAAAUGGAACGUGCACAGGU--AGACUGCAUUUUACGUUUUUCU-CAUAU-G .............((((((..(---------------((((((-(((.((...(((...)))......))))))))--))))...)))))).........-.....-. ( -12.70) >consensus ___AUAUUACUAUUACAAUUUAAAGA__C_AUAU_GCCCAGCU_UGUUGGUAACAUGAAAUUGAAUGUGCAGUGUGAGAGACUGCACUUCACUUUUCACUUAAUCUAA ........................................................(((((((((.(((((((.......))))))))))))))))............ (-11.78 = -13.38 + 1.60)
Location | 17,922,662 – 17,922,766 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 68.59 |
Mean single sequence MFE | -20.48 |
Consensus MFE | -9.12 |
Energy contribution | -11.36 |
Covariance contribution | 2.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.97 |
Structure conservation index | 0.45 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 17922662 104 - 22407834 UUAGAUGAA-AGAAAAGUGAAGUGCAGUCUCUCACACUGCACAUUCACUUUCAUGUUACCAACAAAGUUGGGCAAUAUUGCGUCUUAAAAUUGAAAUAGUAAUAU--- ..(((((..-.((((.((((((((((((.......))))))).)))))))))(((((.(((((...)))))..)))))..)))))....................--- ( -28.10) >DroSec_CAF1 140118 104 - 1 UUAGAUUAAGUGAAAAGUGAAGUGCAGUCUCUCACACUGCACAUUCAAUUUCAUGUUACCAACA-AGCUGGGCAAUAUAGAAUCUUUAAGUUGUAAUAGUAAUAU--- .........((((((..(((((((((((.......))))))).)))).))))))....(((...-...)))(((((.((((...)))).)))))...........--- ( -22.20) >DroSim_CAF1 117839 104 - 1 UUAGGUUAAGUGAAAAGUGAAGUGCAGUCUCUCACACUGCACAUUCACAUUCAUGUAACCAAUA-AGCUGGGCUAUAUUGCGUCUUUAAAUUGUAAUAGUAAUAU--- ...(((((.(((((..((((((((((((.......))))))).))))).))))).)))))....-(((...))).(((((((.........))))))).......--- ( -29.50) >DroEre_CAF1 130238 81 - 1 U-AUAUA-------CAUUGAAGUGCAGUCUCUCCCACUGCACGUUCUAUUUUGUGUUAACAACA-AGCAAG---------------CAAAUUCUAAUAGUUAUAC--- .-..(((-------((..((((((((((.......))))))).))).....)))))........-......---------------...................--- ( -13.40) >DroYak_CAF1 137950 88 - 1 C-AUAUG-AGAAAAACGUAAAAUGCAGUCU--ACCUGUGCACGUUCCAUUUUAUGUUAACAACA-AGCAAA---------------CAAAUUCUAAUAGUAAUACGAG .-.(((.-((((.(((((((((((..((.(--(....)).))....))))))))))).......-.(....---------------)...)))).))).......... ( -9.20) >consensus UUAGAUGAAGAGAAAAGUGAAGUGCAGUCUCUCACACUGCACAUUCAAUUUCAUGUUACCAACA_AGCUGGGC_AUAU_G__UCUUCAAAUUGUAAUAGUAAUAU___ .............(((((((((((((((.......))))))).))))))))......................................................... ( -9.12 = -11.36 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:51 2006